Job Description P25772 Confidence 98.56% Date Thu Jan 5 11:42:38 GMT 2012 Rank 22 Aligned Residues 283 % Identity 16% Template c1x9nA_ PDB info PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase i; PDBTitle: crystal structure of human dna ligase i bound to 5'-adenylated, nicked2 dna Resolution 3.00 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		Q	S	S	V	W	A	V	C	P	A	W	S	P	A	R	A	Q	E	E	I	S	R	L	Q	Q	Q	I	K	Q	W	D	D	D	Y	W	K	E	G	K	S	E	V	E	D	G	V	Y	D	Q	L	S	A	R	L	T	Q	.	.	W	Q	R	C	F	G	S	E	P	R	D	V	M	M	P	P	L	N	G	A	V	M
Query Conservation																																																										.	.
Alig confidence																																									.	.	.	.	.	.	.											.	.																	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.																													.	.	.	.	.	.
Template Sequence		Q	E	F	P	P	A	X	V	D	A	G	K	G	K	T	A	E	A	R	K	T	W	L	E	E	Q	G	X	I	L	K	Q	T	F	C	E	V	P	D	.	.	.	.	.	.	.	L	D	R	I	I	P	V	L	L	E	H	G	L	E	R	L	P	E	H	C	K	L	S	P	G	I	P	L	.	.	.	.	.	.
Template Known Secondary structure				S	S		S		S		T	T	T	T	S																							S			.	.	.	.	.	.	.																T	G	G	G					T	T	S			.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.																													.	.	.	.	.	.
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.								.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		H	P	V	A	H	T	G	V	R	K	M	V	D	K	N	A	L	S	L	W	M	R	E	R	S	D	L	W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	R	D	G	K	L	N	K	A	I	S	R	G	N	G	L	K	G	E	D	W	T	Q	K	V	S	L	I	.	S	A	V	P	Q	T	V	S	G	P
Query Conservation																																																																							.
Alig confidence		.	.							.													.																																.	.	.	.													.
Template Conservation		.	.							.													.																																.	.	.	.
Template Sequence		.	.	K	P	X	L	A	H	.	P	T	R	G	I	S	E	V	L	K	R	F	.	E	E	A	A	F	T	C	E	Y	K	Y	D	G	Q	R	A	Q	I	H	A	L	E	G	G	E	V	K	I	F	S	R	.	.	.	.	N	Q	E	D	N	T	G	K	Y	P	D	I	I	S	R	I	P	K	I	K	L	P	S
Template Known Secondary structure		.	.							.			S	S								T	.	T	T	S									S	S									T	T	S							T	.	.	.	.	T	S		B		T	T	T							T	S	G	G	G	B		T	T
Template Predicted Secondary structure		.	.							.													.																																.	.	.	.
Template SS confidence
				541	.	.	.	.	.		.	.	.	550	.	.	.	.	.	.	.	.		.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.					590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.							.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																														.													.	.	.	.	.	.
Query SS confidence																																														.													.	.	.	.	.	.
Query Sequence		L	A	N	S	T	L	Q	G	E	I	F	L	Q	R	E	G	H	I	Q	Q	Q	M	G	G	I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	T	L	.	N	S	L	G	V	F	V	W	A	W	P	D	.	.	.	.	.	.	G	P	Q	L	M	S	D	R	L	K	E	L	A	T	A	G	F
Query Conservation																																														.													.	.	.	.	.	.
Alig confidence														.	.	.	.	.																												.													.	.	.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		V	T	S	F	I	L	D	T	E	A	V	A	.	.	.	.	.	W	D	R	E	K	K	Q	I	Q	P	F	Q	V	L	T	T	R	K	R	K	E	V	D	A	S	E	I	Q	V	Q	V	C	L	Y	A	F	D	L	I	Y	L	N	G	E	S	L	V	R	E	P	L	S	R	R	R	Q	L	L	R	E	N	F	V
Template Known Secondary structure														.	.	.	.	.			T	T	T		S	B							T	T	S		S	S				G	G	G			S													T	T				T	T	S													B
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		613	.	.	.	.	.	.	620	.	.	.	.						.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.
		245	.	.	.	.	250					.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.								.	.	.	310	.	.	.
Predicted Secondary structure								.	.	.	.																																																									.	.	.	.	.	.	.
Query SS confidence								.	.	.	.																																																									.	.	.	.	.	.	.
Query Sequence		T	L	T	Q	T	Y	.	.	.	.	T	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	W	K	A	E	L	P	F	V	T	D	G	V	V	V	R	A	A	K	E	P	E	S	R	H	W	L	P	G	Q	A	E	W	L	V	A	W	K	Y	Q	.	.	.	.	.	.	.	P	V	A	Q	V	A	E
Query Conservation								.	.	.	.																																																									.	.	.	.	.	.	.
Alig confidence								.	.	.	.																						.	.	.	.																									.	.	.					.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.																									.	.	.
Template Sequence		E	T	E	G	E	F	V	F	A	T	S	L	D	T	K	D	I	E	Q	I	A	E	F	L	E	Q	S	V	K	D	S	.	.	.	.	C	E	G	L	X	V	K	T	L	D	V	D	A	T	Y	E	I	A	K	R	S	H	N	W	.	.	.	L	K	L	K	K	D	Y	L	D	G	V	G	D	T	L	D	L	V
Template Known Secondary structure			B	T	T	T																									T	S	.	.	.	.									S	S	S	S		S	S		T	T	T		S				.	.	.										S	S
Template Predicted Secondary structure																																	.	.	.	.																									.	.	.
Template SS confidence
		688	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.					.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.				.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760
		314	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		V	K	A	I	Q	F	A	V	G	.	K	S	G	K	I	S	V	V
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		V	I	G	A	Y	L	G	R	G	K	R	A	G	R	Y	G	G	F
Template Known Secondary structure								B		T	T	S	B	T	S
Template Predicted Secondary structure
Template SS confidence
		761	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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