Job Description P25772 Confidence 97.76% Date Thu Jan 5 11:42:38 GMT 2012 Rank 30 Aligned Residues 147 % Identity 22% Template c1vs0A_ PDB info PDB header:ligase Chain: A: PDB Molecule:putative dna ligase-like protein rv0938/mt0965; PDBTitle: crystal structure of the ligase domain from m. tuberculosis ligd at2 2.4a Resolution 2.40 Å

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		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.
Query SS confidence																																																																						.	.	.	.
Query Sequence		W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	R	D	G	K	L	N	K	A	I	S	R	G	N	G	L	K	G	E	D	W	T	Q	K	V	S	L	I	S	A	V	P	Q	T	V	S	G	P	L	A	N	S	T	L	Q	G	E	I	F	L	Q	R	E	G	.	.	.	.	H	I	Q	Q	Q	M	G	G
Query Conservation																																																																						.	.	.	.
Alig confidence																					.							.	.	.	.																							.	.															.	.	.	.
Template Conservation																					.							.	.	.	.																							.	.
Template Sequence		W	A	F	E	G	W	D	G	Y	R	L	L	V	E	A	D	H	G	A	.	V	R	L	R	S	R	.	.	.	.	S	G	R	D	V	T	A	E	Y	P	Q	L	R	A	L	A	E	D	L	A	D	H	.	.	H	V	V	L	D	G	E	A	V	V	L	D	S	S	G	V	P	S	F	S	Q	X	Q	N	R	G
Template Known Secondary structure									S									T	T		.						T	.	.	.	.	T			B		G	G	G		G	G	G							T	T	T		.	.											B		T	T	S		B							T
Template Predicted Secondary structure																					.							.	.	.	.																							.	.
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.		.	.	.	.	.	500					.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.			.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.							.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.
Query Sequence		I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	T	L	N	S	L	G	V	F	V	W	A	W	P	D	.	.	.	.	.	.	G	P	Q	L	M	S	D	R	L	K	E	L	A	T	A	G	F	T	L	T	Q	T	Y	T	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	W	K
Query Conservation																																		.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.																													.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.
Template Sequence		R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	R	V	E	F	W	A	F	D	L	L	Y	L	D	G	R	A	L	L	G	T	R	Y	Q	D	R	R	K	L	L	E	T	L	A	N	A	T	S	L	T	V	P	E	L	L	P	.	.	G	D	G	A	Q	A	F	A	C	S	R	K
Template Known Secondary structure		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S													T	T				T	T	S																S										.	.	S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.
Template SS confidence
		550																			.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.			.	.	600	.	.	.	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	L	P	F	V	T	D	G	V	V	V	R	A	A	K	E	P	E	S	R	H	W	L	P	G	Q	A	E	W
Query Conservation
Alig confidence				.	.	.	.																		.	.
Template Conservation				.	.	.	.																		.	.
Template Sequence		H	G	.	.	.	.	W	E	G	V	I	A	K	R	R	D	S	R	Y	Q	P	G	R	.	.	R	C	A	S	W
Template Known Secondary structure		T	T	.	.	.	.									T	T					T	T		.	.
Template Predicted Secondary structure				.	.	.	.																		.	.
Template SS confidence
		610	.					.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.			.	630	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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