Job Description P25772 Confidence 100.00% Date Thu Jan 5 11:42:38 GMT 2012 Rank 2 Aligned Residues 532 % Identity 23% Template c1v9pB_ PDB info PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase Resolution 2.90 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.							.	.	.	80	.	.	.	.	.	.	.	.	.				90	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.														.	.	.
Query SS confidence																																																						.	.	.	.	.	.														.	.	.
Query Sequence		W	S	P	A	R	A	Q	E	E	I	S	R	L	Q	Q	Q	I	K	Q	W	D	D	D	Y	W	K	E	G	K	S	E	V	E	D	G	V	Y	D	Q	L	S	A	R	L	T	Q	W	Q	R	C	F	G	.	.	.	.	.	.	S	E	P	R	D	V	M	M	P	P	L	N	G	.	.	.	A	V	M	H	P	V
Query Conservation																																																						.	.	.	.	.	.														.	.	.
Alig confidence																																																						.	.	.	.	.	.														.	.	.
Template Conservation
Template Sequence		M	T	R	E	E	A	R	R	R	I	N	E	L	R	D	L	I	R	Y	H	N	Y	R	Y	Y	V	L	A	D	P	E	I	S	D	A	E	Y	D	R	L	L	R	E	L	K	E	L	E	E	R	F	P	E	F	K	S	P	D	S	P	T	E	Q	V	G	A	R	P	L	E	P	T	F	R	P	V	R	H	P	T
Template Known Secondary structure																											T	T				S	S																			S	G	G	G			T	T	S	G	G	G	S		S	S	S												S	S
Template Predicted Secondary structure
Template SS confidence
		2001	.	.	.	.	.	.	.	.	2010	.	.	.	.	.	.	.	.	.	2020	.	.	.	.	.	.	.	.	.	2030	.	.	.	.	.	.	.	.	.	2040	.	.	.	.	.	.	.	.	.	2050	.	.	.	.	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.										.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.
Query Sequence		A	H	T	G	V	R	K	M	V	D	K	N	A	L	S	L	W	M	R	.	.	.	.	.	.	.	.	.	E	R	S	D	L	W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	R	D	G	K	L	N	K	A	I	S	R	G	N	G	L	K	G	E	D	W	T	Q	K	V	S	L	I	S	A	V	P	Q
Query Conservation																					.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	M	Y	S	L	D	N	A	F	T	Y	E	E	V	L	A	F	E	E	R	L	E	R	A	L	G	R	K	R	P	F	L	Y	T	V	E	H	K	V	D	G	L	S	V	N	L	Y	Y	E	E	G	V	L	V	F	G	A	T	R	G	D	G	E	V	G	E	E	V	T	Q	N	L	L	T	I	P	T	I	P	R
Template Known Secondary structure											S												T	T	T	T	S	S																B							T	T										S	S	S				B						T	T		T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		2081	.	.	.	.	.	.	.	.	2090	.	.	.	.	.	.	.	.	.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.	2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.	.	.	.	.	2140	.	.	.	.	.	.	.	.	.	2150	.	.	.	.	.	.	.	.	.	2160
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.									.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.						.	.	.	.	230	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.																								.											.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.																								.											.	.	.	.	.
Query Sequence		T	V	S	G	P	L	A	N	S	T	L	Q	G	E	I	F	L	Q	R	E	G	H	I	Q	Q	Q	.	.	.	.	.	.	.	.	M	G	G	I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	T	L	.	N	S	L	G	V	F	V	W	A	W	.	.	.	.	.	P	D	G	P	Q	L	M
Query Conservation																												.	.	.	.	.	.	.	.																								.											.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.																								.											.	.	.	.	.
Template Conservation
Template Sequence		R	L	K	G	V	P	D	R	L	E	V	R	G	E	V	Y	M	P	I	E	A	F	L	R	L	N	E	E	L	E	E	R	G	E	K	V	F	K	N	P	R	N	A	A	A	G	S	L	R	Q	K	D	P	R	V	T	A	K	R	G	L	R	A	T	F	Y	A	L	G	L	G	L	E	E	S	G	L	K	S	Q
Template Known Secondary structure		B		S	S			S							B		B																S	S					S	S										S		S						T	T	S			B							S	T	T	T	T	T	T	T			B
Template Predicted Secondary structure
Template SS confidence
		2161	.	.	.	.	.	.	.	.	2170	.	.	.	.	.	.	.	.	.	2180	.	.	.	.	.	.	.	.	.	2190	.	.	.	.	.	.	.	.	.	2200	.	.	.	.	.	.	.	.	.	2210	.	.	.	.	.	.	.	.	.	2220	.	.	.	.	.	.	.	.	.	2230	.	.	.	.	.	.	.	.	.	2240
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.																							.	.
Query SS confidence																																					.	.																							.	.
Query Sequence		S	D	R	L	K	E	L	A	T	A	G	F	T	L	T	Q	T	Y	T	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	.	.	W	K	A	E	L	P	F	V	T	D	G	V	V	V	R	A	A	K	E	P	E	S	.	.	R	H	W	L	P	G	Q	A	E	W	L	V	A	W	K	Y	Q	P	V
Query Conservation																																					.	.																							.	.
Alig confidence																				.																	.	.																							.	.
Template Conservation																				.
Template Sequence		Y	E	L	L	L	W	L	K	E	K	G	F	P	V	E	H	G	Y	.	E	K	A	L	G	A	E	G	V	E	E	V	Y	R	R	F	L	A	Q	R	H	A	L	P	F	E	A	D	G	V	V	V	K	L	D	D	L	A	L	W	R	E	L	G	Y	T	A	R	A	P	R	F	A	L	A	Y	K	F	P	A	E
Template Known Secondary structure											T	T					S			.					S															G	G	G	S	S	S									B	S	B	T						S		B		S	S	S	B	T	T
Template Predicted Secondary structure																				.
Template SS confidence
		2241	.	.	.	.	.	.	.	.	2250	.	.	.	.	.	.	.	.		.	2260	.	.	.	.	.	.	.	.	.	2270	.	.	.	.	.	.	.	.	.	2280	.	.	.	.	.	.	.	.	.	2290	.	.	.	.	.	.	.	.	.	2300	.	.	.	.	.	.	.	.	.	2310	.	.	.	.	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.			.	.	.	.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		A	Q	V	A	E	V	K	A	I	Q	F	A	V	G	K	S	G	K	I	S	V	V	A	S	L	A	P	V	M	L	D	D	K	K	V	Q	R	V	N	I	G	S	V	R	R	W	Q	E	W	D	I	A	P	G	D	Q	I	L	V	S	L	A	G	Q	G	I	P	R	I	D	D	V	V	.	.	W	R	G	A	E
Query Conservation																																																																											.	.
Alig confidence																																																																											.	.
Template Conservation
Template Sequence		E	K	E	T	R	L	L	D	V	V	F	Q	V	G	R	T	G	R	V	T	P	V	G	V	L	E	P	V	F	I	E	G	S	E	V	S	R	V	T	L	H	N	E	S	Y	I	E	E	L	D	I	R	I	G	D	W	V	L	V	H	K	A	G	G	V	I	P	E	V	L	R	V	L	K	E	R	R	T	G	E
Template Known Secondary structure																T	T		B												S	S	S	S									S							T	T			T	T								G	G	G	S	S								G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		2320	.	.	.	.	.	.	.	.	.	2330	.	.	.	.	.	.	.	.	.	2340	.	.	.	.	.	.	.	.	.	2350	.	.	.	.	.	.	.	.	.	2360	.	.	.	.	.	.	.	.	.	2370	.	.	.	.	.	.	.	.	.	2380	.	.	.	.	.	.	.	.	.	2390	.	.	.	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.									400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.
Query Sequence		R	T	K	P	T	P	P	E	N	R	F	N	S	.	.	.	.	.	.	.	.	L	T	C	Y	F	A	S	D	V	C	Q	E	Q	F	I	S	R	L	V	W	L	G	A	K	Q	V	L	G	L	D	G	I	G	E	A	G	W	R	A	L	H	Q	T	H	R	F	E	H	I	F	S	W	L	L	L	T	P	E	Q
Query Conservation															.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	R	P	I	R	W	P	E	T	C	P	E	C	G	H	R	L	V	K	E	G	K	V	H	R	C	P	N	P	L	C	P	A	K	R	F	E	A	I	R	H	Y	A	S	R	K	A	M	D	I	E	G	L	G	E	K	L	I	E	R	L	L	E	K	G	L	V	R	D	V	A	D	L	Y	H	L	R	K	E	D
Template Known Secondary structure									S	B		T	T	T			B		B			T	T	S		B				T	T		G	G	G										S	T	T	T	T			T	T													T	S		S	S	G	G	G	G	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		2400	.	.	.	.	.	.	.	.	.	2410	.	.	.	.	.	.	.	.	.	2420	.	.	.	.	.	.	.	.	.	2430	.	.	.	.	.	.	.	.	.	2440	.	.	.	.	.	.	.	.	.	2450	.	.	.	.	.	.	.	.	.	2460	.	.	.	.	.	.	.	.	.	2470	.	.	.	.	.	.	.	.	.
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.				.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		L	Q	N	T	P	G	I	A	K	S	K	S	A	Q	L	W	H	Q	F	N	L	A	R	K	Q	P	F	T	R	W	V	M	A	M	G	I	P	L	T	R	.	.	.	A	A	L	N	A	S	D	E	R	S	W	S	Q	L	L	F	S	T	E	Q	F	W	Q	Q	L	P	G	T	G	S	G	R	A	R	Q	V	I
Query Conservation																																										.	.	.
Alig confidence																																										.	.	.
Template Conservation
Template Sequence		L	L	G	L	E	R	M	G	E	K	S	A	Q	N	L	L	R	Q	I	E	E	S	K	H	R	G	L	E	R	L	L	Y	A	L	G	L	P	G	V	G	E	V	L	A	R	N	L	A	R	R	F	G	T	M	D	R	L	L	E	A	S	L	E	E	L	L	E	V	E	E	V	G	E	L	T	A	R	A	I	L
Template Known Secondary structure				T	T	S	S			S	S	S								T	T	T	G	G	G	S										T		T	T															B					T	T								T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		2480	.	.	.	.	.	.	.	.	.	2490	.	.	.	.	.	.	.	.	.	2500	.	.	.	.	.	.	.	.	.	2510	.	.	.	.	.	.	.	.	.	2520	.	.	.	.	.	.	.	.	.	2530	.	.	.	.	.	.	.	.	.	2540	.	.	.	.	.	.	.	.	.	2550	.	.	.	.	.	.	.	.	.
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	W	K	E	N	A	Q	I	K	K	L	G	S	W	L	A	A	Q	Q	I	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	L	K	D	P	A	F	R	D	L	V	R	R	L	K	E	A	G	V	S	M
Template Known Secondary structure					T														T	T
Template Predicted Secondary structure
Template SS confidence
		2560	.	.	.	.	.	.	.	.	.	2570	.	.	.	.	.	.	.	.	.	2580	.