Return to main results Retrieve Phyre Job Id

Job DescriptionP25772
Confidence98.29%DateThu Jan 5 11:42:38 GMT 2012
Rank25Aligned Residues217
% Identity15%Templatec1p8lA_
PDB info PDB header:ligaseChain: A: PDB Molecule:pbcv-1 dna ligase; PDBTitle: new crystal structure of chlorella virus dna ligase-adenylate
Resolution2.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   118.120.........130.........140.........150.........160.........170.........180.........190.......
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  DLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQGEIFLQREGHIQQQMGGIN
Query Conservation     









 
 

 
 

 
 




  




 

  
  

  
       





 
    
       

Alig confidence 













...




...


....






......





























.....
Template Conservation      
 
 

 
  ...     ... 

.... 
     ......              




      
    .....
Template Sequence  PCLATPKIDGIRSV. . . KQTQM. . . LSR. . . . TFKPIRN. . . . . . SVMNRLLTELLPEGSDGEISIEGATFQDTT. . . . .
Template Known Secondary structure  S



S...SSS...
T....TSSB
SS......S
TT
TTS
TT.....
Template Predicted Secondary structure 


...
...
....





......









.....
Template SS confidence 















































































   21........30.... ..... 40.. ....... 50.........60.........70.........
 
   198.200.........210.........220...... ...230.........240 .........250.........260....
Predicted Secondary structure 





..




...........







Query SS confidence 




























. .













. . . . . . . . . . .























Query Sequence  ARAKVAGLMMRQDDSDTLNSLGVFVWAWP. . DGPQLMSDRLKELA. . . . . . . . . . . TAGFTLTQTYTRAVKNADEVARVR
Query Conservation 






 
 
         
    
   ..       
 
  
 ...........  

 
             
    
Alig confidence  .......





















..













...........























Template Conservation  .......                 




      
  

   
                                    
Template Sequence  . . . . . . . SAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYE
Template Known Secondary structure  .......SS

SS




SS
SSS
SGGGG

SS




S
Template Predicted Secondary structure  .......




























Template SS confidence 















































































   80.........90.........100.........110.........120.........130.........140.........150..
 
   265....270.........280.........290.........300.........310.........320.........330.........340....
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  NEWWKAELPFVTDGVVVRAAKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQ
Query Conservation      
  
 
 







       
 
   








  
   
 
  
  





 




 



 
 
 


Alig confidence 






....





























.






























.





Template Conservation        
.... 



 
   
 
  

   
   


 
 .    
  
 
     
       

      .      
Template Sequence  RDVLSKG. . . . FEGVMIRKPDGKYKFGRSTLKEGILLKMKQ. FKDAEATIISMTALFKNFGYEDVMGSIEVDY. DGVVFS
Template Known Secondary structure  TT....
S

TT



SSB

TTT
S


.











S.TT

Template Predicted Secondary structure 

....


















.














.

Template SS confidence 















































































   153...... 160.........170.........180......... 190.........200.........210.........220 ......
 
   345....350 .........360........
Predicted Secondary structure 


....






Query SS confidence 





. . . .

















Query Sequence  RVNIGS. . . . VRRWQEWDIAPGDQILVS
Query Conservation 





....   
    
 


 
 
 
Alig confidence 





....

















Template Conservation 



 
            
  
 



 
Template Sequence  IGTGFDADQRRDFWQNKESYIGKMVKFK
Template Known Secondary structure 
SS

TTTTTTSTTTTT
Template Predicted Secondary structure 










Template SS confidence 



























   247..250.........260.........270....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions