Job Description P25772 Confidence 96.94% Date Thu Jan 5 11:42:38 GMT 2012 Rank 43 Aligned Residues 185 % Identity 17% Template c1p16A_ PDB info PDB header:transferase Chain: A: PDB Molecule:mrna capping enzyme alpha subunit; PDBTitle: structure of an mrna capping enzyme bound to the2 phosphorylated carboxyl-terminal domain of rna polymerase3 ii Resolution 2.70 Å

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		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		V	D	K	N	A	L	S	L	W	M	R	E	R	S	D	L	W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	.	.	.	.	R	D	G	K	L	N	K	A	I	S	R	G	N	G	L	K	G	E	D	W	T	Q	K	V	S	L	I	S	A	V	P	Q	T	V	S	G	P	L	A	N	S	T	L	Q	G
Query Conservation																																	.	.	.	.
Alig confidence															.																		.	.	.	.														.
Template Conservation															.																																			.
Template Sequence		F	E	R	R	H	L	E	E	T	L	X	Q	K	.	D	Y	F	V	C	E	K	T	D	G	L	R	C	L	L	F	L	I	N	D	P	D	K	G	E	G	V	F	L	V	T	R	E	N	.	D	Y	Y	F	I	P	N	I	H	F	P	L	S	V	N	E	T	R	E	K	P	T	Y	H	H	G	T	L	L	D	G
Template Known Secondary structure									T					S	.										S											T	T	T									T	T		.							S					S		T	T			S	S	S					S	S
Template Predicted Secondary structure															.																																			.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.							.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	F	L	Q	R	E	G	H	I	Q	Q	Q	M	G	G	I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	T	L	N	S	L	G	V	F	V	W	A	W	.	.	.	.	.	.	P	D	G	P	Q	L	M	S	D	R	L	K	E	L	A	T	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	V	L	E	N	R	N	V	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	L	R	Y	V	I	F	D	A	L	A	I	H	G	K	C	I	I	D	R	P	L	P	K	R	L	G	Y	I	T	E	N	V	X	K	P	F	D	N	F	K	K	H
Template Known Secondary structure									S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T				T	T	S													T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.																										.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
											242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	A	G	F	T	L	T	Q	T	Y	T	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	W	K	A	E	L	P	F	V	T	D	G	V	V	V	R	A	A	K	E	P	E	S	R	H	W	L	P	G	Q	A	E	W	L	V	A	W	K	Y	Q	P	V	A	Q	V	A
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																									.	.	.	.	.																									.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.																									.	.	.	.	.	.
Template Sequence		N	P	D	I	V	N	S	P	E	F	P	F	K	V	G	F	K	T	X	L	T	S	Y	H	A	D	D	V	L	S	K	X	D	.	.	.	.	.	K	L	F	H	A	S	D	G	L	I	Y	T	C	A	E	T	P	Y	V	F	G	T	D	Q	.	.	.	.	.	.	T	L	L	K	W	K	P	A	E	E	N	T
Template Known Secondary structure							S		T	T	S												G	G	G	T					T	T	G	G	.	.	.	.	.	G		S	S										S	S	S				S					.	.	.	.	.	.								G	G	G
Template Predicted Secondary structure																																			.	.	.	.	.																									.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.						.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.							.	.	240	.	.	.	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	K	A	I	Q	F	A	V	G	K	S	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	F	Q	L	E	F	V	F	N	E	V	Q	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions