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Job DescriptionP25772
Confidence100.00%DateThu Jan 5 11:42:38 GMT 2012
Rank3Aligned Residues529
% Identity22%Templatec1dgsB_
PDB info PDB header:ligaseChain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60.........70...... ...80....... ..90.....
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Query Sequence  WSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFG. . . . . . SEPRDVMMPPL. . . NGAVMHPV
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Template Sequence  MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSPTEQVGARPLEPTFRPVRHPT
Template Known Secondary structure 

TTS

SS

GGG

TTSGGGT
SSS







SS
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   2001........2010.........2020.........2030.........2040.........2050.........2060.........2070.........2080
 
   96...100.........110....... ..120.........130.........140.........150.........160........
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Query Sequence  AHTGVRKMVDKNALSLWMRERS. . . . . . . DLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTV
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Template Sequence  RMYSLDNAFTYEEVLAFEERLEREAEAPSLYTVEHKVDGLSV. LYYEEGVW. . STGSGDGEVGEEVTQNLLTIPTIPRRL
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STTSSS
SS


S
.TT..

SS

TTSTTS
SB
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   2081........2090.........2100.........2110.........2120.. .......2130 .........2140.........2150.......
 
   169170.........180.........190.. .......200.........210..... ....220..... ....230..
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Query Sequence  SGPLANSTLQGEIFLQREGHIQQQ. . . . . . . . MGGINARAKVAGLMMRQDDSDTL. NSLGVFVWAW. . . . . . . PDGPQLM
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Template Sequence  KGVPDRLEVRGEVYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGLEESGLKSQ
Template Known Secondary structure  SS

S
B

SS



SSS
S
S

B

SSSSSSSS



B
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   2158.2160.........2170.........2180.........2190.........2200.........2210.........2220.........2230.......
 
   233......240.........250.........260....... ..270.........280......... 290.........300........
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Query Sequence  SDRLKELATAGFTLTQTYTRAVKNADEVARVRNEW. . WKAELPFVTDGVVVRAAKEPES. . RHWLPGQAEWLVAWKYQPV
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Template Sequence  YELLLWLKEKGFPVEHCY. EKALGAEGVEEVYRRGLAQRHALPFEADGVVLKLDDLTLWGELGYTARAPRFALAYKFPAE
Template Known Secondary structure  TT



S
.STGGGSSS


SBTTS
B
SSSBTT



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   2238.2240.........2250..... ....2260.........2270.........2280.........2290.........2300.........2310......
 
   309310.........320.........330.........340.........350.........360.........370.........380... ...
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Query Sequence  AQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWR. . GAE
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Template Sequence  EKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEVSRVTLHNESYIEELDIRIGDWVLVHKAGGVIPEVLRVLKERRTGK
Template Known Secondary structure 

TT
BSSSS

STT
BSS
TTT
GGG

S
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   2317..2320.........2330.........2340.........2350.........2360.........2370.........2380.........2390......
 
   387..390......... 400.........410.........420.........430.........440.........450........
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Query Sequence  RTKPTPPENRFNS. . . . . . . . LTCYFASDVCQEQFISRLVWLGAKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQ
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Template Sequence  ERPIRWPEACPECGHRLVKEGKVHRCPNPLCPAKRFEAIRHYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKED
Template Known Secondary structure 

B



SB
TTT

B
TT


TT
GGGSTTTT

TT

TS
SSGGGGTT


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   2397..2400.........2410.........2420.........2430.........2440.........2450.........2460.........2470......
 
   459460.........470.........480.........490........ .500.........510.........520.........530.....
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Query Sequence  LQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTR. . . AALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVI
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Template Sequence  LLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAIL
Template Known Secondary structure  TTSS

SSGGGS
T
TT


BT

TSTT

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   2477..2480.........2490.........2500.........2510.........2520.........2530.........2540.........2550......
 
   536...540.........550.......
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Query Sequence  EWKENAQIKKLGSWLAAQQITG
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Template Sequence  ETLKDPAFRDLVRRLKEAGVSM
Template Known Secondary structure 
TT


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   2557..2560.........2570........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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