Job Description P25772 Confidence 98.10% Date Thu Jan 5 11:42:38 GMT 2012 Rank 26 Aligned Residues 203 % Identity 16% Template c1a0iA_ PDB info PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: atp-dependent dna ligase from bacteriophage t7 complex with2 atp Resolution 2.60 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.								.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.
Query Sequence		A	H	T	G	V	R	K	M	V	D	K	N	A	L	S	L	W	M	R	E	R	S	D	L	W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	R	D	G	K	L	N	K	A	I	S	R	G	N	G	L	K	G	E	D	W	T	Q	K	.	.	.	.	.	.	.	V	S	L	I	S	A	V	P	Q	T	V
Query Conservation																																																																.	.	.	.	.	.	.
Alig confidence							.	.																																												.	.	.	.									.	.	.	.	.	.	.
Template Conservation							.	.																																												.	.	.	.
Template Sequence		P	F	K	A	V	.	.	S	F	V	E	S	A	I	K	K	A	L	D	N	A	G	Y	L	I	A	E	I	K	Y	D	G	V	R	G	N	I	C	V	D	N	T	A	N	S	Y	W	L	S	R	.	.	.	.	V	S	K	T	I	P	A	L	E	H	L	N	G	F	D	V	R	W	K	R	L	L	N	D	D	R
Template Known Secondary structure							.	.															S	S									S									T	T	S							T	.	.	.	.	T	S		B		G	G	G	G	G	G													S	T	T
Template Predicted Secondary structure							.	.																																												.	.	.	.
Template SS confidence
		8	.	10	.	.			.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.																	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Query Sequence		S	G	P	L	A	N	S	T	L	Q	G	E	I	F	L	Q	R	E	G	H	I	Q	Q	Q	M	G	G	I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	T	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	G	V	F	V	W	A	W	P	D	.	.	.	.	.
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	F	Y	K	D	G	F	M	L	D	G	E	L	M	V	K	G	V	D	F	N	T	G	.	.	.	.	.	.	.	.	.	.	.	S	G	L	L	R	T	K	W	T	D	T	K	N	Q	E	F	H	R	K	K	D	K	V	P	F	K	L	H	T	G	H	L	H	I	K	L	Y	A	I	L	P	L	H	I	V	E
Template Known Secondary structure					T	T											S	S	S		T	T	T		.	.	.	.	.	.	.	.	.	.	.								S			S	S	B	S	S						S						B		T	T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.												.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
									228	.	230	.	.	.	.	.	.	.	.	.	240	.	.							.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	G	P	Q	L	M	S	D	R	L	K	E	L	A	T	A	.	.	.	.	.	.	G	F	T	L	T	Q	T	Y	T	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	W	K	A	E	L	P	F	V	T	D	G	V	V	V	R	A	A	K	E	P	E	S	R	H	W	L	P
Query Conservation		.	.	.	.	.	.	.																.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																.	.	.	.	.	.																														.	.	.	.
Template Conservation																																																											.	.	.	.
Template Sequence		S	G	E	D	C	D	V	M	T	L	L	M	Q	E	H	V	K	N	M	L	P	L	L	Q	E	Y	F	P	E	I	E	W	Q	A	A	E	S	Y	E	V	Y	D	M	V	E	L	Q	Q	L	Y	E	Q	K	R	A	E	G	.	.	.	.	H	E	G	L	I	V	K	D	P	M	C	I	Y	K	R	G	K	K	S
Template Known Secondary structure																													T	T	S											S	S													T	T	T	.	.	.	.									T	T					S
Template Predicted Secondary structure																																																											.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.					.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		G	Q	A	E	W	L	V	A	W	K	Y	Q	.	P	V	A	Q	V	A	E	V	K	A	I	Q	F	A	V	G	K	S	G
Query Conservation														.
Alig confidence			.	.	.		.	.	.					.
Template Conservation			.	.	.		.	.	.
Template Sequence		G	.	.	.	W	.	.	.	W	K	M	K	P	E	N	E	A	D	G	I	I	Q	G	L	V	W	G	T	K	G	L	A
Template Known Secondary structure			.	.	.		.	.	.				S																	T	T	T	S
Template Predicted Secondary structure			.	.	.		.	.	.
Template SS confidence
		235				.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions