Job Description Q46890 Confidence 4.86% Date Thu Jan 5 12:35:32 GMT 2012 Rank 39 Aligned Residues 107 % Identity 13% Template c7mdhA_ PDB info PDB header:chloroplastic malate dehydrogenase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: structural basis for light acitvation of a chloroplast enzyme. the2 structure of sorghum nadp-malate dehydrogenase in its oxidized form Resolution 2.40 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.										.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.
Query Sequence		A	T	P	T	G	S	C	L	G	N	L	D	P	Q	R	L	S	K	V	A	A	D	G	E	W	L	S	G	D	K	P	S	K	E	V	L	F	H	L	A	L	Y	R	.	.	.	.	.	.	.	.	.	N	N	P	R	C	K	A	V	V	H	L	H	S	T	W	S	T	A	L	S	C	L	Q	G	L	D	S	S
Query Conservation																																													.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		V	S	I	G	I	D	P	Y	E	V	F	E	D	V	D	W	A	L	L	I	G	A	K	P	R	G	P	G	M	E	R	A	A	L	L	D	I	N	G	Q	I	F	A	D	Q	G	K	A	L	N	A	V	A	S	K	N	V	K	V	L	V	V	G	N	P	C	N	T	N	A	L	I	C	L	K	N	A	.	.	.
Template Known Secondary structure						S						T	T	T		S												T	T																									S		T	T							S	S	S											T		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.						.	160	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		N	V	I	R	P	F	T	P	Y	V	V	M	R	M	G	N	V	P	L	V	P	Y	Y	R	P	G	D	K	R	I	A	Q	D	L	A	E	L	A	A	D	N	Q	.	.	.	.	.	A	F	L	L	A	N	H	G
Query Conservation																																												.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	P	D	I	P	A	K	N	F	H	A	L	T	R	L	D	E	N	R	A	K	C	Q	L	A	L	K	A	G	V	F	Y	D	K	V	S	N	V	T	I	W	G	N	H	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T	T	S		G	G	G																				T	T	S		G	G	G								B		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions