Job Description P0ABN5 Confidence 8.00% Date Thu Jan 5 11:15:55 GMT 2012 Rank 78 Aligned Residues 181 % Identity 15% Template c3aqpB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus Resolution 3.30 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.																		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	I	G	I	G	F	A	G	G	L	G	V	L	V	L	A	A	I	G	V	K	P	G	N	I	P	F	D	V	I	S	I	I	M	A	V	I	A	A	I	S	A	M	Q	V	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	D	Y	L	V	H	Q	T	E	K	L	L	R	R
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	I	R	S	A	L	I	G	T	L	A	I	F	L	L	I	F	A	Y	Y	G	P	H	L	G	L	V	A	S	L	G	L	L	Y	T	S	A	L	I	L	G	L	L	S	G	L	G	A	T	L	T	L	P	G	I	A	G	L	V	L	T	L	G	A	A	V	D	G	N	V	L	S	F	E	R	I	K	E	E
Template Known Secondary structure																							T
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	K	Y	I	T	I	L	A	P	I	V	T	Y	F	L	T	I	F	A	G	T	G	N	I	S	L	A	T	L	P	V	I	A	E	V	A	K	E	Q	G	V	K	P	C	R	P	L	S	T	A	V	V	S	A	Q	I	A	I	T	A	S	P	I	S	A	A	V	V	Y	M	S	S	V	M	E	G	H	G	I
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Template Sequence		L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	G	K	K	L	R	Q	A	I	P	E	G	F	R	H	S	T	L	T	I	M	D	V	N	I	A	H	L	L	A	A	A	A	L	Y	Q	Y	A	.	.	T
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T																																			T		.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Template SS confidence
		353																																						.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.			.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	L	H	L	L	S	V	V	I	P	S	T	L	L	A	V	L	V	M	S	F	L	V	T	M	L	F	N	S	K	L	S	D	D	P	I	Y	R	K	R	L	E	E	G	L	V	E	L	R	G	E	K	Q	I	E	I	K	S	G	A	K	T	S	V	W	L	F	L	L	G	V	V	G	V	V	I	Y	A	I
Query Conservation
Alig confidence																													.	.	.	.					.
Template Conservation																													.	.	.	.					.
Template Sequence		G	P	V	R	G	F	A	V	I	L	A	I	G	V	V	A	S	V	F	S	N	L	V	F	S	R	H	.	.	.	.	L	L	E	R	.	L	A	D	R	G	E	I	R	P	P	M	W	L	V	D	P	R	F	N	F	M	G	P	A	R	Y	V	T	A	A	T	L	L	L	A	A	L	A	A	G	V	V	F	A
Template Known Secondary structure		T																											.	.	.	.					.					T														S	T	T	T	T
Template Predicted Secondary structure																													.	.	.	.					.
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420					.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
		243	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		469	470

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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