 |
Job Description | P05100 | Confidence | 31.29% | Date | Thu Jan 5 10:58:41 GMT 2012 |
Rank | 39 | Aligned Residues | 89 |
% Identity | 15% | Template | c2h56C_ |
PDB info |
PDB header:hydrolase | Chain: C: PDB Molecule:dna-3-methyladenine glycosidase; |
PDBTitle: crystal structure of dna-3-methyladenine glycosidase (10174367) from2 bacillus halodurans at 2.55 a resolution
|
Resolution | 2.55 Å |
|
 |
  |   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | S | Q | D | P | L | Y | I | A | Y | H | D | N | E | W | G | V | P | E | T | D | S | K | K | L | F | E | M | I | C | L | E | G | Q | Q | A | G | L | S | W | I | T | V | L | K | K | R | E | N | Y | R | A | C | F | H | Q | F | D | P | V | K | V | A | A | M | Q | E | E | D | V | E | R | L | V | Q | D | A | G | I | I |
Query Conservation |   |
  |   |   |   |
|
|   |   |   |
|
|
|   |
|
|
|   |
|   |   |
|
|   |   |
|
|
|   |
|   |
|
|   |
|
|
|
|
|
|
|   |
|
|
|   |
|
|   |   |
|
|   |
|
|   |   |
|
|   |   |   |
|
|   |   |   |
|   |   |
|
|   |
|   |   |
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |
|
|   |
|   |   |
|
|   |   |   |   |
|
|
|   |   |   |   |   |
|
|
|
|   |
|
|   |
|
|
|   |
|
|
|
|   |   |
|
|   |   |
|   |   |
|
|   |   |   |   |   |   | . |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|   | . | . | . | . | . | . | . |
Template Sequence |   |
V | A | Q | D | S | R | L | F | Q | F | I | E | I | A | G | E | V | Q | L | P | T | K | P | N | P | F | Q | S | L | V | S | S | I | V | E | Q | Q | L | S | I | K | A | A | S | A | I | Y | G | R | V | E | Q | L | A | L | E | . |
K | P | E | Q | L | Y | R | S | D | E | A | L | R | Q | A | V | . |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
 | T | T |
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|
|
| S |
|  |  |  |  |  |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . |
| T | T | T | T |
|
|
|  |  |  |  |  | T |
|
| . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
15 | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | |
. | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | |
|
|
|
|
|
|
  |
  |   |
87 | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | H | R | G | K | I | Q | A | I | I | G | N | A | R | A | Y | L | Q |
Query Conservation |   |
|
|
|   |
|
|   |
|
|
|   |
|
|
|   |   |   |   |
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. |
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |
Template Sequence |   |
. |
S | K | R | K | I | E | Y | I | R | H | V | C | E | H | V | E | S |
Template Known Secondary structure |   |
. |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|