Job Description P76230 Confidence 99.96% Date Thu Jan 5 12:20:56 GMT 2012 Rank 4 Aligned Residues 368 % Identity 14% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	A	I	V	A	F	G	L	L	V	C	W	S	N	A	V	G	G	L	I	L	A	Q	L	K	A	L	G	W	T	D	N	S	T	T	A	T	F	S	A	I	T	T	A	G	M	F	L	G	A	L	V	G	G	I	I	G	D	K	T	G	R	R	N	A	F	I	L	Y	E	A	I	H	I	A	S	M	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	V	I	L	V	G	M	S	I	F	M	L	A	T	L	V
Template Known Secondary structure																												T	T	S	S	S	T	T																			T	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	F	S	P	N	M	D	F	L	I	A	C	R	F	V	M	G	V	G	L	G	A	L	L	V	T	L	F	A	G	F	T	E	Y	M	P	G	R	N	R	G	T	W	S	S	R	V	S	F	I	G	N	W	S	Y	P	L	C	S	L	I	A	M	G	L	T	P	L	I	S	A	E	W	N	W	R	V	Q	L
Query Conservation
Alig confidence																																																							.	.	.	.
Template Conservation																																																							.	.	.	.
Template Sequence		A	V	T	T	S	S	L	T	V	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	.	.	.	.	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T	M	W	N	W	R	A	C	Y
Template Known Secondary structure																																							T	S	S			S											.	.	.	.													S	S
Template Predicted Secondary structure																																																							.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.					.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	P	A	I	L	S	L	I	A	T	A	L	A	W	R	Y	F	P	E	S	P	R	W	L	E	S	R	G	R	Y	Q	E	A	E	K	V	M	R	S	I	E	E	G	V	I	R	Q	T	G	K	P	L	P	P	V	V	I	A	D	D	G	K	A	P	Q	A	V	P	Y	S	A	L	L	T	G	V	L	L	K
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N
Template Known Secondary structure																		S	S				S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T						T	T	T		S	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.																																				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	I	L	G	S	C	V	L	I	A	M	N	V	V	Q	Y	T	L	I	N	W	L	P	T	I	F	M	T	Q	G	I	N	L	K	D	S	I	V	L	N	T	M	S	M	F	G	A	P	F	G	I	F	I	A	M	L	V	M	D	K	I	P	R	K	T	M	G	V	G	L	L	I	L	I	A	V	L	G	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E	A	C	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T	V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I
Template Known Secondary structure																						S		S	S																	T														T	T	T	T																T	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	S	L	Q	T	S	M	L	L	I	T	L	I	G	F	F	L	I	T	F	V	Y	M	Y	V	C	Y	A	S	A	V	Y	V	P	E	I	W	P	T	E	A	K	L	R	G	S	G	L	A	N	A	V	G	R	I	S	G	I	A	A	P	Y	A	V	A	V	L	L	S	S	Y	G	V	T	G	V	F	I	L
Query Conservation
Alig confidence																																									.
Template Conservation																																									.
Template Sequence		P	D	W	F	G	V	M	N	V	W	T	L	L	V	P	A	A	L	F	F	F	G	A	G	M	L	F	P	L	A	T	S	G	A	M	E	P	F	P	.	F	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	G	S	L	G	L	L	M
Template Known Secondary structure																											T	S	S	T	T						T				.																						S	T	T		T
Template Predicted Secondary structure																																									.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		425	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	A	V	S	I	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	M	G	L	L	I	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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