Job Description P23862 Confidence 2.63% Date Thu Jan 5 11:40:03 GMT 2012 Rank 40 Aligned Residues 167 % Identity 11% Template c3r2pA_ PDB info PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein a-i; PDBTitle: 2.2 angstrom crystal structure of c terminal truncated human2 apolipoprotein a-i reveals the assembly of hdl by dimerization. Resolution 2.20 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.				.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		L	L	L	E	K	L	E	G	Q	L	A	T	L	R	Q	R	C	A	P	V	S	Q	F	A	T	L	S	A	R	F	D	R	H	L	.	.	.	F	Q	T	R	A	T	T	L	Q	A	C	L	D	E	A	G	D	N	L	A	A	L	R	H	A	V	E	Q	Q	Q	L	P	Q	V	A	W	L	A	E	H	L	A	A
Query Conservation																																				.	.	.
Alig confidence																						.														.	.	.
Template Conservation																						.
Template Sequence		R	V	K	D	L	A	T	V	Y	V	D	V	L	K	D	S	G	R	D	Y	.	V	S	Q	F	E	G	S	A	L	G	K	Q	L	N	L	K	L	L	D	N	W	D	S	V	T	S	T	F	S	K	L	R	E	Q	L	G	P	V	T	Q	E	F	W	D	N	L	E	K	E	T	E	G	L	R	Q	E	M	S	K
Template Known Secondary structure											T											.							S						T	T					T	T		S		S	S												S
Template Predicted Secondary structure																						.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		Q	L	E	A	I	A	R	E	A	S	A	W	S	L	R	E	W	D	S	A	P	P	K	I	A	R	W	Q	R	K	R	I	Q	H	Q	D	F	E	R	R	.	L	R	E	M	V	A	E	R	R	A	R	L	A	R	V	T	D	L	V	E	Q	Q	T	L	H	R	E	V	E	A	Y	E	A	R	L	A	R	C	R
Query Conservation																																										.
Alig confidence																																										.																						.
Template Conservation																																																																.
Template Sequence		D	L	E	E	V	K	A	K	V	Q	P	Y	L	D	D	F	Q	K	K	W	Q	E	E	M	E	L	Y	R	Q	K	V	E	P	L	R	A	E	L	Q	E	G	A	R	Q	K	L	H	E	L	Q	E	K	L	S	P	L	G	E	E	M	R	D	.	R	A	R	A	H	V	D	A	L	R	T	H	L	A	P	Y	S
Template Known Secondary structure																																																T	T	T	T	T	T	S										.
Template Predicted Secondary structure																																																																.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		161	.	.	.	.		.	.	.	.	170	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		H	A	L	E	K	.	I	E	N	R	L	A	R	L
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		D	E	L	R	Q	R	L	A	A	R	L	E	A	L
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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