Job Description P23862 Confidence 1.76% Date Thu Jan 5 11:40:03 GMT 2012 Rank 76 Aligned Residues 41 % Identity 15% Template c1l6lK_ PDB info PDB header:lipid transport Chain: K: PDB Molecule:apolipoprotein a-ii; PDBTitle: structures of apolipoprotein a-ii and a lipid surrogate2 complex provide insights into apolipoprotein-lipid3 interactions Resolution 2.30 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.																.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	H	L	F	Q	T	R	A	T	T	L	Q	A	C	L	D	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	N	L	A	A	L	R	H	A	V	E	Q	Q	Q	L	P	Q	V	A	W	L	A
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	S	L	V	S	Q	Y	F	Q	T	V	T	D	Y	G	K	D	L	M	E	K	V	K	S	P	E	L	Q	A	K	S	Y	F	E	K	S	K	E	Q	L	T	P	L	I	K	K	A	G	T	E	L	V	N	F	L	S
Template Known Secondary structure																					T	T	T	T	S			S																							T
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions