 |
Job Description | P0ABD5 | Confidence | 52.65% | Date | Wed Jan 25 15:20:22 GMT 2012 |
Rank | 135 | Aligned Residues | 72 |
% Identity | 22% | Template | d1t9ba1 |
SCOP info | DHS-like NAD/FAD-binding domain
| DHS-like NAD/FAD-binding domain
| Pyruvate oxidase and decarboxylase, middle domain
|
Resolution | 2.20 |
|
 |
  |   |
111 | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | P | V | M | I | I | G | H | Q | K | G | R | E | T | K | E | K | I | R | R | N | F | G | M | P | A | P | E | G | Y | R | K | A | L | R | L | M | Q | M | A | E | R | F | K | M | P | I | I | T | F | I | D | T | P | G | A | Y | P | G | V | G | A | E | E | R | G | Q | S | E | A | I | A | R | N | L | R | E | M | S | R |
Query Conservation |   |
  |   |
|   |
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |   |
|
|   |
|   |   |   |
|
|   |   |   |   |
|
|
|
|   |
|
|
|
|   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |
|
|   |   |   |   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
|
|
|
|
|   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |
|   |   |   |
|   |   |   |
|   | . | . |   |
|
|
|   |   |
|   |
|
|   |   |
|   |   |   |
|
|   |   |   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Sequence |   |
K | P | V | L | Y | V | G | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | I | L | N | H | A | D | G | P | R | L | L | K | . |
. |
E | L | S | D | R | A | Q | I | P | V | T | T | T | L | Q | G | L | G | S | F | D | Q | E | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
S |  |  |  |  |  |
| G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | G | G | G | S | T | T |  |  |  |  |  |  | . | . |  |  |  |  |  | T | T |
|
|  |  |  |
| G | G | G | T | T | S | S |
| T | T | S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
|
|  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |
|
|
|  |  |  |
|  |  |  |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
301 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | 310 | . | . | . | . | . | . | . | . | . | 320 | . | |
|
. | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |
  |   |
191 | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | |
. | 210 | . | . | . | . | . | . | . | . | . | 220 |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . |  |  |  |
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | G | V | P | V | V | C | T | V | I | G | E | G | G | S | G | G | A | . |
L | A | I | G | V | G | D | K | V | N | M | L |
Query Conservation |   |
  |   |
|
|   |
|
|
|
|   |
|   |   |   |
|
|
|
| . |   |
|   |   |   |
|
|   |
|   |
|   |
Alig confidence |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|
|   |
|
Template Sequence |   |
. |
. |
. |
P | K | S | L | D | M | L | G | M | H | G | C | A | T | A | N | L | A | V | Q | N | A | D | L | I | I | A | V |
Template Known Secondary structure |   |
. | . | . | T | T |  |  |  |  |
| S | T | T | S |
|  |  |  |  |  |  |  |  |  |
| S |  |  |  |  |  |
Template Predicted Secondary structure |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
346 | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|