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Job DescriptionP0ABD5
Confidence98.72%DateWed Jan 25 15:20:22 GMT 2012
Rank105Aligned Residues142
% Identity21%Templatec3bezC_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:protease 4; PDBTitle: crystal structure of escherichia coli signal peptide peptidase (sppa),2 semet crystals
Resolution2.76 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   113......120.........130.........140.........150.... .....160.........170.........180.........190
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Query Sequence  VMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFK. . MPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSR
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Template Sequence  IGVVFAN. . . . . . GAIXDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSV. . . . . . . TASEVIRAELAAARA
Template Known Secondary structure  ......SSSSS

TTS
TT

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   328.330.... .....340.........350.........360.........370......... 380.........390....
 
   191........200.........210.........220.........230
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Query Sequence  LGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AGKPVVVSXGGXAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQ
Template Known Secondary structure  TT

TTTTT
S
TT




TT






S
GGG


TTS


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   395....400.........410.........420.........430.........440.........450.........460.........470....
 
   231........240.........250.........260.......
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Query Sequence  . . . . . . . . . . . . . . . EGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSI
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Template Sequence  LXXQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSL
Template Known Secondary structure  T

T
TT
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   475....480.........490.........500.........510.........520......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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