Job Description P0AFV4 Confidence 97.84% Date Thu Jan 5 11:27:22 GMT 2012 Rank 12 Aligned Residues 116 % Identity 33% Template c2im9A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein lpg0564 from legionella pneumophila str.2 philadelphia 1, pfam duf1460 Resolution 1.67 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.															.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	N	V	D	V	K	S	R	I	M	D	Q	Y	A	D	W	K	G	V	R	Y	R	L	G	G	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	G	I	D	C	S	G	F	V	Q	R	T	F	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	T	T	S	M	A	D	R	I	S	Q	I	S	A	Y	F	K	G	T	K	Y	I	L	G	S	L	G	E	G	P	N	A	R	Y	D	Q	F	P	R	Y	R	V	D	G	F	D	C	D	T	Y	V	N	T	V	L	S	L	A	L	A	N	S	L	E	S	F	Q	E	C	L	K	H	T	R	Y	K	N	G	K	R
Template Known Secondary structure		T															T	T	T		B	B		T	T				S		T	T		S	S	B		S		S	S		S	S		B																S	S													B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
																			104	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	F	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	Y	I	N	R	N	H	F	T	S	I	D	W	N	N	Y	N	Q	K	R	G	L	L	K	D	I	T	F	S	I	R	N	E	K	K	Q	P	V	A	L	Y	A	N	A	L	I	N	K	P	Q	W	Y	N	H	K	T	I	D	T	I	R	L	Q	K	Q	D	K	N	E	Q	E	K	R	L	V	E	L	K	A	K
Template Known Secondary structure		S	T	T	T	B			S	T	T	T	T								T	T	S					G	G	G		B		T	T	S		B																	T			G	G	G		B		S	S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
														109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.												.	.	140	.	.	.	.	.	.	.	.	.	150				.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.														.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.														.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	E	L	P	R	S	T	Y	E	Q	Q	E	M	G	K	S	V	S	R	S	N	L	R	T	G	D	L	V	L	F	.	.	.	.	.	.	.	.	.	.	.	R	A	G	S	T	G	R	H	V	G	I	Y	I	.	.	.	G	N	N	Q	F	V	H	A	S	T	S	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.														.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template Conservation
Template Sequence		G	K	T	L	E	T	S	L	S	N	V	P	Y	I	P	F	T	A	L	F	S	E	N	K	P	N	L	H	L	F	S	Q	I	P	N	G	A	V	I	E	I	I	R	P	N	W	D	L	R	Q	Q	I	G	T	E	L	D	I	S	H	L	G	F	A	I	W	I	N	N	E	L	F	F	R	Q	A	S	S	Q	Y
Template Known Secondary structure			T	T																	T	G	G	G	S							T	T	S		T	T																	S	S														T	T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	I	I	S	S	M	N	E	P	Y	W	K	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	K	V	V	D	V	S	L	I	D	Y	L	D	K	A
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions