Job Description P22524 Confidence 28.28% Date Thu Jan 5 11:38:55 GMT 2012 Rank 6 Aligned Residues 102 % Identity 25% Template d1u5ta1 SCOP info DNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Vacuolar sorting protein domain Resolution 3.60

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.														.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	N	H	A	F	L	M	D	F	Q	E	Y	L	E	E	F	Y	A	R	Y	N	V	E	L	I	R	A	P	E	G	F	F	Y	L	R	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T	L	I	P	R	S	V	L	S	E	L	D	M	M	V	G	K	I	L	C	Y	L	Y	L	S	P	E
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.
Template Sequence		V	E	L	R	D	Q	L	M	V	F	Q	E	R	L	V	E	F	A	K	K	H	N	S	E	L	Q	A	S	P	E	.	.	.	.	F	R	S	K	F	M	H	M	C	S	S	I	G	I	D	P	L	S	L	F	D	R	D	K	H	L	F	T	V	N	D	F	Y	Y	E	V	C	L	K	V	I	E	I	C	R	Q
Template Known Secondary structure																							T	T	T	T	T	T				.	.	.	.													T							T	T	S	S	G	G	G	T	T
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		108		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		R	.	L	A	N	E	G	I	F	T	Q	Q	E	L	Y	D	E	L	L	T	L	A	D	E	A	K	L	L	K	L	V	N	N	R	S	T	G	S	D	V	D	R	Q	K	L	Q	E	K	V	R	S	S	L	N	R	L	R	R	L	G
Query Conservation			.
Alig confidence			.																.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Template Sequence		T	K	D	M	N	G	G	V	I	S	F	Q	E	L	E	K	V	.	.	.	.	.	.	.	.	.	.	.	.	H	F	R	K	L	N	V	G	.	.	.	.	.	.	.	.	L	D	D	L	E	K	S	I	D	M	L	K	S	L	E
Template Known Secondary structure			T	T	T	S	S	S										T	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T	T	T			.	.	.	.	.	.	.	.												T	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.													.	.	.	.	.	.	.	130									.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions