|   |
53 | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | L | E | E | F | Y | A | R | Y | N | V | E | L | I | R | A | P | E | G | F | F | Y | L | R | P | R | S | T | T | L | I | P | R | S | V | L | S | E | L | D | M | M | V | G | K | I | L | C | Y | L | Y | L | S | P | E | R | L | A | N | E | G | I | F | T | Q | Q | E | L | Y | D | E | L | L | T | L | A | D | E | A | K |
Query Conservation |   |
  |
|   |   |
|
|   |   |
|
|   |
|
|
|   |   |   |
|
|
|
|
|
|   |
|   |   |   |   |   |
|
|   |   |
|
|   |   |
|   |
|   |
|
|
|   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|   |
|   |   |
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
Template Conservation |   |
|
|   |   |
|
|   |
|
|
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |
|
|
|   |   |
|
|
|
|
|
|   | . |
|   |   |   |   |   |
|   |
|
|   |   |   |
|   |   |
|
| . | . | . | . | . | . | . | . |
Template Sequence |   |
D | L | D | A | Y | L | A | R | I | G | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | G | E | R | A | P | T | L | A | T | L | R | E | L | V | Y | R | H | T | T | A | I | P | F | E | N | L | E | . |
A | V | L | G | R | P | V | R | L | D | L | A | T | L | Q | D | K | L | . |
. |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  | T |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
| S |
| S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
| B |
|
|  |  | . |  |  | T | T |
|
|
|
|
| S |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  | . |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
17 | . | . | 20 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | |
. | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | |
|
|
|
|
|
|
|
  |
  |   |
133 | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | L | K | L | V | N | N | R | S | T | G | S | D | V | D | R | Q | K | L | Q | E | K | V | R | S | S | L | N | R | L | R | R | L | G | M |
Query Conservation |   |
|   |   |
|
|   |   |   |   |   |   |
|   |   |
|   |   |
|
|
|
|   |
|   |   |   |
|   |
|
|   |
|
|
|
|
Alig confidence |   |
. | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . |
|   |   |   |
|
|
|
|
|
|
|   |
|   |
|
|   |   |
| . | . | . | . | . | . |
|   |   |
|
|
|
Template Sequence |   |
. |
. |
. |
. |
V | H | S | R | R | G | G | Y | C | Y | E | N | A | G | L | F | A | A | A | . |
. |
. |
. |
. |
. |
L | E | R | L | G | F |
Template Known Secondary structure |   |
. | . | . | . | T | S | S | S |
|
| B |
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
. | . | . | . |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
74 | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | |
|
|
|
|
|
. | . | . | . | . | . |
  |