Job Description P22524 Confidence 14.95% Date Thu Jan 5 11:38:55 GMT 2012 Rank 24 Aligned Residues 100 % Identity 27% Template c3cuqA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Resolution 2.61 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.															.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Query Sequence		A	F	L	M	D	F	Q	E	Y	L	E	E	F	Y	A	R	Y	N	V	E	L	I	R	A	P	E	G	F	F	Y	L	R	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T	L	I	P	R	S	V	L	S	E	L	D	M	M	V	G	K	I	L	C	Y	L	Y	L	S	P	E	R	.	L
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Alig confidence																												.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Template Conservation																												.	.	.	.
Template Sequence		K	Q	L	D	M	F	K	T	N	L	E	E	F	A	S	K	H	K	Q	E	I	R	K	N	P	E	.	.	.	.	F	R	V	Q	F	Q	D	M	C	A	T	I	G	V	D	P	L	A	S	G	K	G	F	W	S	E	M	L	G	V	G	D	F	Y	Y	E	L	G	V	Q	I	I	E	V	C	L	A	L	K	H
Template Known Secondary structure																												.	.	.	.													T			T	T	S		T	T	S
Template Predicted Secondary structure																												.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.					.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.				.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		A	N	E	G	I	F	T	Q	Q	E	L	Y	D	E	L	L	T	L	A	D	E	A	K	L	L	K	L	V	N	N	R	S	T	G	S	D	.	.	.	V	D	R	Q	K	L	Q	E	K	V	R	S	S	L	N	R	L	R	R	L	G
Query Conservation																																						.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.		.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Sequence		R	N	G	G	L	I	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	L	H	Q	Q	V	L	K	G	R	G	K	F	A	Q	D	V	S	.	.	.	.	.	Q	D	D	L	I	R	A	I	K	K	L	K	A	L	G
Template Known Secondary structure				S	S					.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	T	T			S	S			.	.	.	.	.												G	G	G	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.														.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140						.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions