Job Description P37624 Confidence 96.96% Date Thu Jan 5 11:55:58 GMT 2012 Rank 153 Aligned Residues 149 % Identity 10% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	R	C	M	V	G	L	I	G	P	D	G	V	G	K	S	S	L	L	S	L	I	S	G	A	R	V	I	E	Q	G	N	V	M	V	L	G	G	D	M	R	D	P	K	H	R	R	D	V	C	P	R	I	A	W	M	P	Q	G	L	G	K	N	L	Y	H	T	L	S	V	Y	E	N	V	D	F	F	A	R
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	P	Y	V	I	M	F	V	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F	S	V	V	I	A	A	S	D	T	F	.	.	.	.	.	.	.	.	.	.	R	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S										T	T	S	S															T	T										T	T	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.											.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		L	F	G	H	D	K	A	E	R	E	V	R	I	N	E	L	L	T	S	T	G	L	A	P	F	R	D	R	P	A	G	K	L	S	G	G	M	K	Q	K	L	G	L	C	C	A	L	I	H	D	P	E	L	L	I	L	D	E	P	T	.	T	G	V	D	P	L	S	R	S	Q	F	W	D	L	I	D	S	I	R
Query Conservation																																																														.
Alig confidence		.	.	.	.	.	.	.	.																																						.	.														.
Template Conservation		.	.	.	.	.	.	.	.																																						.	.
Template Sequence		.	.	.	.	.	.	.	.	A	I	E	Q	L	E	E	H	A	K	R	I	G	V	K	V	I	K	H	S	Y	G	A	D	P	A	A	V	A	Y	D	A	I	Q	H	A	K	.	.	A	R	G	I	D	V	V	L	I	D	T	A	G	R	S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	K
Template Known Secondary structure		.	.	.	.	.	.	.	.												T	T							S	T	T																.	.			T		S								S	S			S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																						.	.
Template SS confidence
										166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	Q	S	N	M	S	V	L	V	A	T	A	Y	M	E	E	A	E	R	F	D	W	L	V	A	M	N	A	G	E	V	L	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	N	L	V	I	F	V	G	D	A	L	A	G	N	A	I	V	E	Q	A	R	Q	F	N	E	A	V	K	I	D	G	I	I	L	T
Template Known Secondary structure			S								T	T		T	T	T												S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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