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Job DescriptionP37624
Confidence99.42%DateThu Jan 5 11:55:58 GMT 2012
Rank73Aligned Residues386
% Identity15%Templatec3cmvG_
PDB info PDB header:recombinationChain: G: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
Resolution4.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60.........70.........80......
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Query Sequence  TLDIPARCMVGLIGPDGVGKSSLLSLISGARVIEQGNVMVLGGDMRDPKHRRDVC. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL
Template Known Secondary structure  SSSTTS
STTSSTTT


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   1053......1060.........1070.........1080.........1090.........1100.........1110.........1120.........1130..
 
   87..90.........100.........110.........120.........130. ...... ..140..
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Query Sequence  . . . PRIAWMPQGLGKNLYHTLSVYENVDFFARLFGHDKAEREVRINEL. . . . . . . . . . . . . . . . . . . . LTSTGL. APFRD
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Template Sequence  ARSGAVDVIVVDSVAALTPK. . . . . . . . . . AEIEGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIR
Template Known Secondary structure  TTSS


GGG


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TTTTT



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   1133......1140.........1150.. .......1160.........1170.........1180.........1190.........1200..
 
   143......150.........160...... ...170.........180.........190.........200.........210.........220
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Query Sequence  RPAGKLSGGMKQKLGLCCALIHDP. . ELLILDEPTTGVDPLSRSQFWDLIDSIRQRQSNMSVLVATAYMEEAERFDWLVA
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Template Sequence  RIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI. LYGEGINFYGELVDLGV. . . . . . KEKLIEKAGAWYSYKGEKIG
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TT
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   1227..1230.........1240.........1250.........1260.. .......1270......... 1280.........1290.........
 
   221........230.........240.........250.........260.........270.........280.........290....
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Query Sequence  . . . . . . MNAGEVLATGSAEELRQQTQSATLEEAFINLLPQAQRQAHQAVVIPPYQPENAEIAIEARDLTMRFGSFVAVDH
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Template Sequence  QGKANATAWLKDNPETAKEIEKKVRELLLKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSL. . . . . . . SLDI
Template Known Secondary structure  TTS


SSTT

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   1300.........1310.........1320.........1330.........1340.........1350.........1360........ .1370..
 
   295 ....300.........310.........320.........330.........340.........350.........360.........370..
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Query Sequence  V. . NFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDPKDIDTRRRVGYMSQAFSLYNELTVRQNLEL
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Template Sequence  ALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE. HALDPIYARKLGVDIDNLLCSQPDTGEQALEI
Template Known Secondary structure  SSSSTTS
STTSSTSS

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   2050.........2060.........2070.........2080.........2090...... ...2100.........2110.........2120........
 
   373......380.........390.........400.........410.........420.........430...... ...440....
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Query Sequence  HARLFHIPEAEIPARVAEMSERFKLNDVEDILPESLPLGIRQRLSLAVAVIHRPEMLILDEPTS. . . . . . . . GVDPVARD
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Template Sequence  CDA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LARSGAVDVIVVDSVAALTPKAEIEGLAARMMS
Template Known Secondary structure  ............................................TTS



GGG







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   21292130. ........2140.........2150.........2160....
 
   445....450.........460.........470... ......480......
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Query Sequence  MFWQLMVDLSRQDKVTIFISTHFMNEAER. . CDRISLMHAGKVL
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Template Sequence  QAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVK
Template Known Secondary structure  TTTT



TT


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   2173......2180.........2190.........2200.........2210......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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