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Job DescriptionP37624
Confidence100.00%DateThu Jan 5 11:55:58 GMT 2012
Rank40Aligned Residues234
% Identity25%Templatec3b5xB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae
Resolution5.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   258.260.........270.........280...... ...290.........300.........310.........320.........330.....
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Query Sequence  QAHQAVVIPPYQPENAEIAIEARDLTMRF. . GSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWL
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Template Sequence  DLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL
Template Known Secondary structure 

S





SS

S





B

S



SSTTS

SS
S





SS

TTTTTTS

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S
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   323......330.........340.........350.........360.........370.........380.........390.........400..
 
   336...340...... ...350.........360.........370.........380.........390.........400......
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Query Sequence  FGQPVDPKDID. TRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMSERFKLNDVEDILPE. . . . . . . .
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Template Sequence  DGHDVRDYKLTNLRRHFALVSQNVHLFND. TIANNIAY. . . . . AAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGE
Template Known Secondary structure  TTSTTS
SSSSSTT

SS



TT.
T.....TSSSS

S
STTTSTTTTTTSSSS
SS



S
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   403......410.........420.........430. ........ 440.........450.........460.........470......
 
   407..410.........420.........430.........440.........450.........460.........470.........480...
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Query Sequence  . . . SLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHFMNEAERCDRISLMHAG
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Template Sequence  NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL. . QKNKTVLVIAHRLSTIEQADEILVVDEG
Template Known Secondary structure  S
SSS
TTT


SS

S
SS

TTTTT..TTTS


S
GGGGGT
S

SS
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   477..480.........490.........500.........510.........520...... ...530.........540.........550....
 
   484.....490.........
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Query Sequence  KVLASGTPQELVEKRG
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Template Sequence  EIIERGRHADLLAQDG
Template Known Secondary structure 


S
SS

Template Predicted Secondary structure 




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   555....560.........570
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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