Job Description P37624 Confidence 100.00% Date Thu Jan 5 11:55:58 GMT 2012 Rank 9 Aligned Residues 426 % Identity 24% Template c2vf7B_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans Resolution 2.30 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.										.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.																		.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.																		.	.
Query Sequence		G	P	D	G	V	G	K	S	S	L	L	S	L	I	S	G	A	.	.	.	.	.	.	.	.	.	R	V	I	E	Q	G	N	V	M	V	L	G	G	D	M	R	D	.	.	P	K	H	R	R	D	V	C	P	R	I	A	W	M	P	Q	G	L	G	K	N	L	Y	H	T	L	S	V	Y	E	N	V	D	F	F
Query Conservation																			.	.	.	.	.	.	.	.	.																		.	.
Alig confidence																			.	.	.	.	.	.	.	.	.																		.	.																	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.
Template Sequence		T	E	S	A	S	M	K	K	R	V	Q	G	Y	M	I	S	E	E	C	P	L	C	H	G	K	R	L	R	Q	E	A	L	N	V	T	F	A	G	L	D	I	T	E	L	S	R	L	P	L	A	R	V	S	E	L	L	R	P	Y	A	E	.	.	.	.	.	.	E	R	E	P	G	H	A	E	R	V	K	N	R
Template Known Secondary structure													T	T							T	T	T	T	T	S		B						T		B	B	T	T	B						T	T	S	B														.	.	.	.	.	.	T		S	T	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.							330	.	.	.	.	.	.	.	.	.	340	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.										.																												.	.
Query SS confidence																				.	.										.																												.	.
Query Sequence		A	R	L	F	G	H	D	K	A	E	R	E	V	R	I	N	E	L	.	.	L	T	S	T	G	L	A	P	F	.	R	D	R	P	A	G	K	L	S	G	G	M	K	Q	K	L	G	L	C	C	A	L	I	H	D	P	E	.	.	L	L	I	L	D	E	P	T	T	G	V	D	P	L	S	R	S	Q	F	W	D
Query Conservation																				.	.										.																												.	.
Alig confidence																				.	.										.																												.	.
Template Conservation
Template Sequence		P	E	Q	A	I	A	L	Q	R	M	A	A	D	L	V	K	R	L	D	V	L	L	H	L	G	L	G	Y	L	G	L	D	R	S	T	P	T	L	S	P	G	E	L	Q	R	L	R	L	A	T	Q	L	Y	S	N	L	F	G	V	V	Y	V	L	D	E	P	S	A	G	L	H	P	A	D	T	E	A	L	L	S
Template Known Secondary structure																									T	T		T	T	S	B	S	S		B	G	G	G	S														T	T	S				S								T	T	T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.							.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																			.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.
Query Sequence		L	I	D	S	I	R	Q	R	Q	S	N	M	S	V	L	V	A	T	A	Y	M	E	E	A	E	R	F	D	W	L	V	A	M	.	.	.	.	.	.	N	A	G	E	V	L	A	T	G	S	A	E	E	L	R	Q	Q	T	Q	S	A	T	L	E	E	A	F	I	N	L	L	P	Q	A	Q	R	Q	A	H	Q	A
Query Conservation																																			.	.	.	.	.	.
Alig confidence										.	.																								.	.	.	.	.	.																																						.	.	.	.
Template Conservation										.	.																																																																			.	.	.	.
Template Sequence		A	L	E	N	L	K	R	G	.	.	G	N	S	L	F	V	V	E	H	D	L	D	V	I	R	R	A	D	W	L	V	D	V	G	P	E	A	G	E	K	G	G	E	I	L	Y	S	G	P	P	E	G	L	K	H	V	P	E	S	Q	T	G	Q	Y	L	F	A	D	R	H	T	E	P	H	T	P	.	.	.	.
Template Known Secondary structure								T	T	.	.	T																	S							S	S	S	G	G	G			S							G	G	G	G	G	S		T	T									T										.	.	.	.
Template Predicted Secondary structure										.	.																																																																			.	.	.	.
Template SS confidence
		423	.	.	.	.	.	.	430			.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	I	P	P	Y	Q	P	E	N	A	E	I	A	I	E	A	R	D	L	T	M	R	F	G	S	F	V	A	V	D	H	V	N	F	R	I	P	R	G	E	I	F	G	F	L	G	S	N	G	C	G	K	S	T	T	M	K	M	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	R	E	P	A	G	W	L	E	L	N	G	V	T	R	N	.	.	.	.	.	N	L	D	N	L	D	V	R	F	P	L	G	V	M	T	S	V	T	G	V	S	G	S	G	K	S	T	L	V	S	Q	A	L	V	D	A	L	A	A	H	F	G	Q	G	S	A	R	L	G	G	D	L
Template Known Secondary structure		.	.	.	.	.	.	.	.				S											T	.	.	.	.	.	T											S	S							S	T	T	S	S						T	T										S									S	S	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																.	.	.	.	.
Template SS confidence
										497	.	.	500	.	.	.	.	.	.	.	.	.	510	.						.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
																																																														324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	L	P	A	S	E	G	E	A	W	L	F	G	Q	P	V	D	P	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	I	T	R	L	V	R	V	D	Q	K	P	I	G	R	T	P	R	S	N	M	A	T	Y	T	G	L	F	D	Q	V	R	K	L	F	A	A	T	P	L	A	K	K	R	G	Y	N	A	G	R	F	S	F	N	V	K	G	G	R	C	E	H	C	Q	G	E	G	W	V	M	V	P	S	V	Y	A	P	C	P
Template Known Secondary structure		G	G									S	S		S		S	S	T	T								T	T								T	T	S	S	T					S				T	T	S	S		S	S	S	S	S	S	B		S	S	S	T	T														T
Template Predicted Secondary structure
Template SS confidence
		581	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660
		344	.	.	.	.	.	350							.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.		.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.																																																				.
Query SS confidence									.	.	.	.	.	.																																																				.
Query Sequence		D	I	D	T	R	R	R	.	.	.	.	.	.	V	G	Y	M	S	Q	A	F	S	L	Y	N	E	L	T	V	R	Q	N	L	E	L	H	A	R	L	F	H	I	P	E	A	E	I	P	A	R	V	A	E	M	S	E	R	F	K	L	N	D	V	E	.	D	I	L	P	E	S	L	P	L	G	I	R	Q	R	L
Query Conservation									.	.	.	.	.	.																																																				.
Alig confidence									.	.	.	.	.	.																							.	.	.	.	.	.																								.
Template Conservation																																					.	.	.	.	.	.
Template Sequence		V	C	H	G	T	R	Y	N	A	E	T	L	E	V	E	Y	R	G	K	N	I	A	D	V	L	A	L	T	V	D	E	A	H	D	F	.	.	.	.	.	.	F	A	D	E	S	A	I	F	R	A	L	D	T	L	R	E	V	G	L	G	Y	L	R	L	G	Q	P	A	T	E	L	S	G	G	E	A	Q	R	I
Template Known Secondary structure		T	T	S	S	S		B		T	T	G	G	G			S	S	S								T		B								.	.	.	.	.	.	T	T	T															T		T	T	S	B	T	T			G	G	G			S
Template Predicted Secondary structure																																					.	.	.	.	.	.
Template SS confidence
		666	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700							.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.
		417	.	.	420	.	.	.	.	.	.	.				.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480							.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																																																						.	.	.	.	.	.
Query SS confidence													.	.	.																																																						.	.	.	.	.	.
Query Sequence		S	L	A	V	A	V	I	H	R	P	E	.	.	.	M	L	I	L	D	E	P	T	S	G	V	D	P	V	A	R	D	M	F	W	Q	L	M	V	D	L	S	R	Q	D	K	V	T	I	F	I	S	T	H	F	M	N	E	A	E	R	C	D	R	I	S	L	M	.	.	.	.	.	.	H	A	G	K	V	L	A
Query Conservation													.	.	.																																																						.	.	.	.	.	.
Alig confidence													.	.	.																												.																										.	.	.	.	.	.
Template Conservation																																											.
Template Sequence		K	L	A	T	E	L	R	R	S	G	R	G	G	T	V	Y	V	L	D	E	P	T	T	G	L	H	P	A	D	V	E	R	L	Q	R	Q	L	V	K	L	V	.	D	A	G	N	T	V	I	A	V	E	H	K	M	Q	V	V	A	A	S	D	W	V	L	D	I	G	P	G	A	G	E	D	G	G	R	L	V	A
Template Known Secondary structure										S	S	S	S									S		S	S																		.		T	T														T	T		S							S	S	S	G	G	G			S
Template Predicted Secondary structure																																											.
Template SS confidence
		740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780		.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	T	P	Q	E	L	V	E	K	R	G	A	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	G	T	P	A	E	V	A	Q	A	A	G	S	V	T
Template Known Secondary structure				S						T		S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		819	820	.	.	.	.	.	.	.	.	.	830	.	.	.