Job Description P37624 Confidence 95.22% Date Thu Jan 5 11:55:58 GMT 2012 Rank 370 Aligned Residues 173 % Identity 14% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	A	E	R	E	V	R	I	N	E	L	L	T	S	T	G	L	A	P	F	R	D	R	P	A	G	K	L	S	G	G	M	K	Q	K	L	G	L	C	C	A	L	I	H	D	P	E	L	L	I	L	D	E	P	T	T	G	V	D	P	L	S	R	S	Q	F	W	D	L	I	D	S	I	R	Q	R	Q	S	N
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Sequence		D	D	K	V	F	R	G	L	L	E	E	Y	L	S	M	K	G	I	K	V	E	S	A	E	R	G	K	.	.	.	.	.	.	.	.	.	E	A	Y	K	L	L	S	E	K	H	F	N	V	V	L	L	D	L	L	L	P	D	V	N	G	.	.	.	.	.	.	L	E	I	L	K	W	I	K	E	R	S	P	E
Template Known Secondary structure																		T							S	S			.	.	.	.	.	.	.	.	.									S			S						S	B		S	S	S	B		.	.	.	.	.	.												T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.										.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.							60	.	.	.	.	.	.	.	.	.	70	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	V	L	V	A	T	A	Y	M	E	E	A	E	R	F	D	W	L	V	A	M	N	A	G	E	V	L	A	T	G	S	A	E	E	L	R	Q	Q	T	Q	S	A	T	L	E	E	A	F	I	N	L	L	P	Q	A	Q	R	Q	A	H	Q	A	V	V	I	P	P	Y	Q	P	E	N	A	E	I	A	I	E	A
Query Conservation
Alig confidence																																																																														.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		T	E	V	I	V	I	T	G	H	G	T	I	K	T	A	V	E	A	M	K	M	G	A	Y	D	F	L	T	K	P	C	M	L	E	E	I	E	L	T	I	N	K	A	I	E	H	R	K	L	R	K	E	N	E	L	L	R	R	E	K	D	L	K	E	E	E	Y	V	F	E	S	P	K	M	K	E	.	.	.	.
Template Known Secondary structure		S								T	T										T	T	T								S																																T	T								S						.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	L	T	M	R	F	G	S	F	V	A	V	D	H	V	N	F	R	I	P	R	G	E	I	F	G	F	L	G	S	N	G	C	G	K	S	T	T	M	K	M	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	I	L	E	K	I	K	K	I	S	C	A	E	C	P	V	L	I	T	G	E	S	G	V	G	K	E	V	V	A	R	L	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.									T	T			S							S	T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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