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Job DescriptionP37624
Confidence97.89%DateThu Jan 5 11:55:58 GMT 2012
Rank107Aligned Residues182
% Identity21%Templatec1mkyA_
PDB info PDB header:ligand binding proteinChain: A: PDB Molecule:probable gtp-binding protein enga; PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   41........50.........60.........70.........80.........90.........100.........110.........120
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Query Sequence  VGLIGPDGVGKSSLLSLISGARVIEQGNVMVLGGDMRDPKHRRDVCPRIAWMPQGLGKNLYHTLSVYENVDFFARLFGHD
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Template Sequence  VLIVGRPNVGKSTLFNKLVK. . DPVQDTVEWYGKT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   4.....10.........20... ......30......
 
   121........130.........140.........150.........160.........170.........180.........190.........200
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Query Sequence  KAEREVRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLCCALIHDPELLILDEPTTGVDPLSRSQFWDLIDSIRQRQSNM
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Template Sequence  . . . . . . . . . . . FKLVDTCGVFDNPQDIISQKXKEVTL. . NXIREADLVLFVVDGKRGITKEDES. . . . LADFLRKSTVDT
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TTTTSSGGG


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STTT


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   51........60.........70...... ...80.........90.........100. ........110...
 
   201....... .210.........220.........230.........240.........250.........260.........270.......
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Query Sequence  SVLVATAY. . . MEEAERFDWLVAMNAGEVLATGSAEELRQQTQSATLEEAFINLLPQAQRQAHQAVVIPPYQPENAEIAI
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Template Sequence  ILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTXLETIIKKLEEKGLDLESKP. . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S

STGGGSS
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BTTTTBSTT

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   114.....120.........130.........140.........150.........160.........170.....
 
   278.280.........290.........300.........310.........320....
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Query Sequence  EARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTG
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Template Sequence  . . . . . . . . . . . . . . . . . . . . EITDAIKVAIVGRPNVGKSTLFNAILN
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S

STTSST
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   176...180.........190.........200..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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