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Job DescriptionP38054
Confidence99.98%DateThu Jan 5 11:57:54 GMT 2012
Rank5Aligned Residues195
% Identity23%Templated1iwga7
SCOP infoMultidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain
Resolution3.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   302.......310........ .320.........330.........340.........350.........360.........370........
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Query Sequence  AAVKDKLETLKSSLPEG. . . VEIVTTYDRSQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAF
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Template Sequence  RPIFAWVIAIIIMLAGGLAILKLPVAQYPTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTF
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   8.10.........20.........30.........40.........50.........60.........70.........80.......
 
   379380.........390.........400.........410.........420.........430.........440.........450........
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Query Sequence  IVMHFQGLNANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIIT
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Template Sequence  AVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAE. . . . . . . . . . EGLPPKEATRKSMGQIQGALVGIAMVLS
Template Known Secondary structure  TTT

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   381........390.........400.........410.........420.. .......430.........440.........450
 
   459460.........470.........480.........490.........500......
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Query Sequence  LSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIR
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Template Sequence  AVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLK
Template Known Secondary structure  TTTT


TTSTTTS

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   451........460.........470.........480.........490........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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