Job Description P23305 Confidence 99.97% Date Thu Jan 5 11:39:21 GMT 2012 Rank 1 Aligned Residues 171 % Identity 27% Template c3e98B_ PDB info PDB header:unknown function Chain: B: PDB Molecule:gaf domain of unknown function; PDBTitle: crystal structure of a gaf domain containing protein that belongs to2 pfam duf484 family (pa5279) from pseudomonas aeruginosa at 2.43 a3 resolution Resolution 2.43 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		G	T	V	S	L	V	E	W	H	M	A	R	A	R	N	H	I	H	V	L	E	E	N	M	A	L	L	M	E	Q	A	I	A	N	E	G	L	F	Y	R	L	L	Y	L	Q	R	S	L	T	A	A	S	S	L	D	D	M	L	M	R	F	H	R	W	A	R	D	.	L	G	L	A	G	A	S	L	R	L	F	P
Query Conservation																																																																					.
Alig confidence																																																																					.
Template Conservation
Template Sequence		D	A	V	S	L	V	E	R	Q	V	R	L	L	R	E	R	N	I	E	X	R	H	R	L	S	Q	L	X	D	V	A	R	E	N	D	R	L	F	D	K	T	R	R	L	V	L	D	L	L	D	A	T	S	L	E	D	V	V	S	T	V	E	D	S	L	R	H	E	F	Q	V	P	Y	V	S	L	I	L	F	S
Template Known Secondary structure																																																			T			S															T	S			S
Template Predicted Secondary structure
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		D	R	W	R	L	G	A	P	S	N	H	T	H	L	A	L	S	R	Q	S	F	E	P	L	R	I	Q	R	L	G	Q	E	Q	H	Y	L	G	P	L	N	G	P	E	L	L	V	V	L	P	E	.	.	A	K	A	V	G	S	V	A	M	S	M	L	G	S	D	A	D	L	G	V	V	L	F	T	S	R	D	A
Query Conservation																																																				.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	S	R	S	V	S	S	A	E	.	.	.	.	.	.	.	.	.	.	.	.	A	H	Q	A	I	G	G	L	L	S	G	K	T	V	C	G	V	L	R	P	H	E	L	A	F	L	F	G	E	S	D	R	D	E	I	G	S	A	A	V	V	S	L	S	F	Q	G	L	H	G	V	L	A	I	G	S	P	D	P
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.						T	T	S									S																T	T		S									S	S	S										S	S	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.													.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	H	Y	Q	Q	G	Q	G	T	Q	L	L	H	E	I	A	L	M	L	P	E	L	L	E	R	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	H	Y	K	S	S	L	G	T	L	F	L	G	Y	V	A	E	V	L	A	R	V	L	P	R	F
Template Known Secondary structure		T	T	T	S	S	T	T	T	T														G	G	G
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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