Job Description P23305 Confidence 20.40% Date Thu Jan 5 11:39:21 GMT 2012 Rank 84 Aligned Residues 116 % Identity 15% Template c2uv0G_ PDB info PDB header:transcription Chain: G: PDB Molecule:transcriptional activator protein lasr; PDBTitle: structure of the p. aeruginosa lasr ligand-binding domain2 bound to its autoinducer Resolution 1.8 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.											.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	Y	L	Q	R	S	L	T	A	A	S	S	L	D	D	M	L	M	R	F	H	R	W	A	R	D	L	G	L	A	G	A	S	L	R	L	F	P	D	R	W	R	L	G	A	P	.	.	.	.	.	.	.	.	.	.	S	N	H	T	H	L	A	L	S	R	Q	S	F	E	P	L	R	I	Q	R	L	G	Q
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	V	D	G	F	L	E	L	E	R	S	S	G	K	L	E	W	S	A	I	L	Q	K	X	A	S	D	L	G	F	S	K	I	L	F	G	L	L	P	K	D	S	Q	D	Y	E	N	A	F	I	V	G	N	Y	P	A	A	W	R	E	H	Y	D	R	A	G	Y	A	R	V	D	P	T	V	S	H	C	T	Q	S
Template Known Secondary structure										T	T																			T											T	T				G	G	G	S						S											T	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		159	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure												.	.	.										.	.													.
Query SS confidence												.	.	.										.	.													.
Query Sequence		E	Q	H	Y	L	G	P	L	N	G	.	.	.	P	E	L	L	V	V	L	P	E	.	.	A	K	A	V	G	S	V	A	M	S	M	L	.	G	S	D	A	D	L	G	V	V	L	F	T	S	R	D
Query Conservation												.	.	.										.	.													.
Alig confidence												.	.	.										.	.													.
Template Conservation
Template Sequence		V	L	P	I	F	W	E	P	S	I	Y	Q	T	R	K	Q	H	E	F	F	E	E	A	S	A	A	G	L	V	Y	G	L	T	X	P	L	H	G	A	R	G	E	L	G	A	L	S	L	S	V	E	A
Template Known Secondary structure		S	S						G	G	G			S													T	T		S										T	T	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions