Job Description P23305 Confidence 65.72% Date Thu Jan 5 11:39:21 GMT 2012 Rank 42 Aligned Residues 140 % Identity 14% Template c2gx5B_ PDB info PDB header:transcription Chain: B: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody; PDBTitle: n-terminal gaf domain of transcriptional pleiotropic repressor cody Resolution 1.74 Å

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		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.					100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.								.	150	.	.
Predicted Secondary structure																		.	.	.	.																																																		.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.																																																		.	.	.	.	.	.	.
Query Sequence		G	L	F	Y	R	L	L	Y	L	Q	R	S	L	T	A	A	.	.	.	.	S	S	L	D	D	M	L	M	R	F	H	R	W	A	R	D	L	G	L	A	G	A	S	L	R	L	F	P	D	R	W	R	L	G	A	P	S	N	H	T	H	L	A	L	S	R	Q	S	F	.	.	.	.	.	.	.	E	P	L	R
Query Conservation																		.	.	.	.																																																		.	.	.	.	.	.	.
Alig confidence																		.	.	.	.																	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.
Template Sequence		A	L	L	Q	K	T	R	I	I	N	S	M	L	Q	A	A	A	G	K	P	V	N	F	K	E	M	A	E	T	L	R	D	V	I	D	S	.	.	.	.	.	.	N	I	F	V	V	S	R	R	G	K	L	L	G	Y	S	I	N	Q	Q	I	E	N	D	R	M	K	K	M	L	E	D	R	Q	F	P	E	E	Y
Template Known Secondary structure																S				S																T	S	.	.	.	.	.	.							T	T	S	B							S	S														T	B
Template Predicted Secondary structure																																						.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.							.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.							.
Query SS confidence																																	.	.	.							.
Query Sequence		I	Q	R	L	G	Q	E	Q	H	Y	L	G	P	L	N	G	P	E	L	L	V	V	L	P	E	A	K	A	V	G	S	.	.	.	V	A	M	S	M	L	.	G	S	D	A	D	L	G	V	V	L	F	T	S	R	D	A	S	H	Y	Q	Q	G	Q	G	T	Q	L	L	H	E	I	A	L	M	L	P	E	L	L
Query Conservation																																	.	.	.							.
Alig confidence																																	.	.	.							.																			.	.
Template Conservation																																																													.	.
Template Sequence		T	K	N	L	F	N	V	P	E	T	S	S	N	L	D	I	N	S	E	T	A	F	P	V	E	N	R	D	L	F	Q	A	G	L	T	T	I	V	P	I	I	G	G	G	E	R	L	G	T	L	I	L	S	R	L	Q	D	Q	F	.	.	N	D	D	D	L	I	L	A	E	Y	G	A	T	V	V	G	M	E	I
Template Known Secondary structure							T			S							T	T					S		G	G	G	G	G	G	G	S	S	S										T	T											S	S				.	.
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		229	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		155	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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