 |
Job Description | P75783 | Confidence | 58.05% | Date | Thu Jan 5 12:14:05 GMT 2012 |
Rank | 25 | Aligned Residues | 64 |
% Identity | 20% | Template | c3ry3B_ |
PDB info |
PDB header:transport protein | Chain: B: PDB Molecule:putative solute-binding protein; |
PDBTitle: putative solute-binding protein from yersinia pestis.
|
Resolution | 2.43 Å |
|
 |
  |   |
634 | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | R | H | E | D | A | D | K | A | N | Q | A | L | K | D | A | V | A | E | L | M | E | N | E | E | I | R | G | L | I | I | G | E | P | N | F | A | G | I | V | G | L | S | N | T | A | F | T | L | R | V | S | F | T | T | L | P | L | K | Q | W | T | V | R | F | A | L | D | S | Q | V | K | K | H | F | D | L | A | G | V |
Query Conservation |   |
  |
|   |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |   |
|   |   |
|
|   |   |
|
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|
|
Template Sequence |   |
I | K | D | G | D | I | D | K | A | K | Q | I | L | E | Q | A | G | W | Q | L | N | S | Q | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | T | R | E | K | N | G | L | P | A | K | I | T | L | W | Y | T | S | G | D | T | T | R | . |
. |
. |
. |
R | D | L | A | Q | A | L | R | S | X | L | K | P | I | G | I |
Template Known Secondary structure |   |
|
|
| S |
|  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |
| T | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | S | S |  |  |  | T | T |  |  |
|  |  |  |  |  |  |  | S | S |
|  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | G | G | G | T |
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
325 | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | |
|
|
|
. | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . |
  |
  |   |
714 | . |
Predicted Secondary structure |   |
|
|
Query SS confidence |   |
|
|
Query Sequence |   |
R | A |
Query Conservation |   |
|
|
Alig confidence |   |
|
|
Template Conservation |   |
  |
|
Template Sequence |   |
D | V |
Template Known Secondary structure |   |
 |  |
Template Predicted Secondary structure |   |
 |  |
Template SS confidence |   |
|
|
  |   |
387 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|