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Job DescriptionP75783
Confidence99.97%DateThu Jan 5 12:14:05 GMT 2012
Rank1Aligned Residues246
% Identity20%Templatec2vv5D_
PDB info PDB header:membrane proteinChain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs
Resolution3.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   466...470.........480.........490.........500.........510.........520.........530.........540.....
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Query Sequence  ILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAG
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Template Sequence  NIVAALAIIIVGLIIARMISNAVNRLMIS. . . . . . . . RKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLG
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   30.........40.........50........ .60.........70.........80.........90.........100.
 
   546...550.........560.........570.........580.........590.........600.........610.... .....620..
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Query Sequence  ALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSI. . TTFANFVR.
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Template Sequence  AAGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSRE
Template Known Secondary structure  TTT
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   102.......110.........120.........130.........140.........150.........160.........170.........180.
 
   623......630.........640.........650.........660.........670.........680.........690.........700..
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Query Sequence  GIGSVVANYDVDRHEDADKANQALKDAVAELMENEEIRGLIIGEPNFAGIVGLSNTAFTLRVSFTTLPLKQWTVRFALDS
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Template Sequence  PVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRI. . . . . . LKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLE
Template Known Secondary structure  S
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   182.......190.........200.........210..... ....220.........230.........240.........250.....
 
   703......710.........720.....
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Query Sequence  QVKKHFDLAGVRAPVQTYQVLPA
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Template Sequence  RIKREFDAAGISFPYPQMDVNFK
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   256...260.........270........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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