Job Description P30178 Confidence 100.00% Date Thu Jan 5 11:46:15 GMT 2012 Rank 2 Aligned Residues 345 % Identity 26% Template c3i0pA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of malate dehydrogenase from entamoeba histolytica Resolution 2.60 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		G	H	R	F	D	A	Q	T	L	H	S	F	I	Q	A	V	F	R	Q	M	G	S	E	E	Q	E	A	K	L	V	A	D	H	L	I	A	A	N	L	A	G	H	D	S	H	G	I	G	M	I	P	S	.	Y	V	R	S	W	S	Q	G	H	L	Q	I	N	H	H	A	K	T	V	K	E	A	G	A	A	V	T
Query Conservation																																																						.
Alig confidence																																																						.
Template Conservation
Template Sequence		T	K	N	V	S	I	D	T	I	K	E	F	M	Y	Q	V	L	L	K	V	G	S	D	E	E	N	A	R	M	V	R	D	T	L	I	A	A	D	L	R	G	M	D	T	H	G	I	Q	R	F	K	T	V	Y	I	D	R	I	K	K	G	M	I	N	P	T	A	K	P	S	I	I	R	E	T	S	T	T	C	V
Template Known Secondary structure																					T	T																				T		T	T	S	S	G	G	G					T						T	T		S		T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	G	D	R	A	F	G	Q	V	A	A	H	E	A	M	A	L	G	I	E	K	A	H	Q	H	G	I	A	A	V	A	L	H	N	S	H	H	I	G	R	I	G	Y	W	A	E	Q	C	A	A	A	G	F	V	S	I	H	F	V	S	V	V	G	I	P	M	V	A	P	F	H	G	R	D	S	R	F	G	T
Query Conservation
Alig confidence																																																															.	.
Template Conservation																																																															.	.
Template Sequence		L	D	G	N	N	G	F	G	H	V	N	G	T	I	G	M	K	M	A	I	E	K	A	K	K	Y	G	M	G	M	V	V	V	R	N	S	T	H	F	G	I	A	G	Y	Y	S	L	L	A	A	Q	E	G	C	I	G	I	C	G	T	N	.	.	A	R	S	S	V	A	A	T	F	G	D	E	P	I	L	G	T
Template Known Secondary structure					T	T																						S													S												T	T									.	.		S	S		B			T	T			S			B
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.
Predicted Secondary structure																																																																	.	.	.									.	.	.	.	.	.
Query SS confidence																																																																	.	.	.									.	.	.	.	.	.
Query Sequence		N	P	F	C	V	V	F	P	R	K	D	N	F	P	L	L	L	D	Y	A	T	S	A	I	A	F	G	K	T	R	V	A	W	H	K	G	V	P	V	P	P	G	C	L	I	D	V	N	G	V	P	T	T	N	P	A	V	M	Q	E	S	P	L	.	.	.	G	S	L	L	T	F	A	E	.	.	.	.	.	.
Query Conservation																																																																	.	.	.									.	.	.	.	.	.
Alig confidence																																																																	.	.	.									.	.	.	.	.	.
Template Conservation
Template Sequence		N	P	L	A	I	G	I	P	S	D	E	A	F	P	Y	C	F	D	G	A	T	S	I	S	P	T	G	R	F	E	K	Y	V	R	M	G	K	T	V	D	K	S	W	A	S	M	K	G	G	K	P	I	E	D	P	K	E	L	L	E	N	Y	P	K	G	K	A	Y	L	H	P	L	G	G	S	D	E	V	S	G
Template Known Secondary structure											S	S	S	S								S	B	S	S											T	T					S	S	S				T	T	S		B			S								T	T	T	T	S					B	T	T		S	S	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
			234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																.																							.																.
Query SS confidence		.																																.																							.																.
Query Sequence		.	H	K	G	Y	A	L	A	A	M	C	E	I	L	G	G	A	L	S	G	G	K	T	T	H	Q	E	T	L	Q	T	S	.	P	D	A	I	L	N	C	M	T	T	I	I	I	N	P	E	L	F	G	A	P	D	.	C	N	A	Q	T	E	A	F	A	E	W	V	K	A	S	.	P	H	D	D	D	K	P	I
Query Conservation		.																																.																							.																.
Alig confidence		.																																.																							.																.
Template Conservation
Template Sequence		S	H	K	G	Y	C	L	S	E	F	V	E	I	M	S	S	C	L	S	I	A	N	F	L	N	H	I	E	E	E	K	E	K	S	G	K	F	S	L	G	H	F	F	I	A	I	N	V	E	C	F	R	D	L	N	E	F	K	K	N	V	G	D	I	N	R	T	L	R	N	T	D	K	L	P	G	H	D	R	I
Template Known Secondary structure																		T	T	T	T				T	T										S	S												G	G	G	T	S																		T	S				T	T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	P	G	E	W	E	V	N	T	R	R	E	R	Q	K	Q	G	I	P	L	D	A	G	S	W	Q	A	I	C	D	A	A	R	Q	I	G	M	P	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	T	A	G	E	K	E	Y	E	T	E	Q	K	R	R	K	F	G	D	D	L	P	L	V	T	I	N	E	M	K	E	L	S	S	F	Y	N	V	P	L	P
Template Known Secondary structure				T	T																																	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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