Job Description P30178 Confidence 100.00% Date Thu Jan 5 11:46:15 GMT 2012 Rank 3 Aligned Residues 340 % Identity 28% Template c1z2iA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of agrobacterium tumefaciens malate2 dehydrogenase, new york structural genomics consortium Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	R	F	D	A	Q	T	L	H	S	F	I	Q	A	V	F	R	Q	M	G	S	E	E	Q	E	A	K	L	V	A	D	H	L	I	A	A	N	L	A	G	H	D	S	H	G	I	G	M	I	P	S	Y	V	R	S	W	S	Q	G	H	L	Q	I	N	H	H	A	K	T	V	K	E	A	G	A	A	V	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	L	A	R	L	D	E	L	E	R	F	C	R	A	V	F	L	A	V	G	T	D	E	E	T	A	D	A	A	T	R	A	M	M	H	G	T	R	L	G	V	D	S	H	G	V	R	L	L	A	H	Y	V	T	A	L	E	G	G	R	L	N	R	R	P	Q	I	S	R	V	S	G	F	G	A	V	E	T	I
Template Known Secondary structure																					T	T																			T	T		G	G	G	S	G	G	G											T	S	S		S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	D	R	A	F	G	Q	V	A	A	H	E	A	M	A	L	G	I	E	K	A	H	Q	H	G	I	A	A	V	A	L	H	N	S	H	H	I	G	R	I	G	Y	W	A	E	Q	C	A	A	A	G	F	V	S	I	H	F	V	S	V	V	G	I	P	M	V	A	P	F	H	G	R	D	S	R	F	G	T	N
Query Conservation
Alig confidence																																																														.	.
Template Conservation																																																														.	.
Template Sequence		D	A	D	H	A	H	G	A	R	A	T	Y	A	A	M	E	N	A	M	A	L	A	E	K	F	G	I	G	A	V	A	I	R	N	S	S	H	F	G	P	A	G	A	Y	A	L	E	A	A	R	Q	G	Y	I	G	L	A	F	C	N	.	.	S	D	S	F	V	R	L	H	D	G	A	M	R	F	H	G	T	N
Template Known Secondary structure				S	S																						S													S		T										T	T	S								.	.		S			B			T	T		S	S			B
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.				.	.	.	.	.	.	240
Predicted Secondary structure																																																																								.	.	.
Query SS confidence																																																																								.	.	.
Query Sequence		P	F	C	V	V	F	P	R	K	D	N	F	P	L	L	L	D	Y	A	T	S	A	I	A	F	G	K	T	R	V	A	W	H	K	G	V	P	V	P	P	G	C	L	I	D	V	N	G	V	P	T	T	N	P	A	V	M	Q	E	S	P	L	G	S	L	L	T	F	A	E	.	.	.	H	K	G	Y	A	L	A
Query Conservation																																																																								.	.	.
Alig confidence																																																											.	.	.	.	.									.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		P	I	A	V	G	V	P	A	A	D	D	M	P	W	L	L	D	M	A	T	S	A	V	P	Y	N	R	V	L	L	Y	R	S	L	G	Q	Q	L	P	Q	G	V	A	S	D	G	D	G	V	D	T	R	D	P	N	A	V	.	.	.	.	.	E	M	L	A	P	V	G	G	E	F	G	F	K	G	A	A	L	A
Template Known Secondary structure										S	S	S									S	B	S	S		T										T					T	T	S				T	T	S		B		S		T	T	T		.	.	.	.	.					B	T	T	G	G	G
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.						.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.																							.
Query SS confidence																										.	.	.																							.
Query Sequence		A	M	C	E	I	L	G	G	A	L	S	G	G	K	T	T	H	Q	E	T	L	Q	T	S	.	.	.	P	D	A	I	L	N	C	M	T	T	I	I	I	N	P	E	L	F	G	A	P	D	.	C	N	A	Q	T	E	A	F	A	E	W	V	K	A	S	P	H	D	D	D	K	P	I	L	L	P	G	E	W	E
Query Conservation																										.	.	.																							.
Alig confidence																										.	.	.																							.
Template Conservation
Template Sequence		G	V	V	E	I	F	S	A	V	L	T	G	M	R	L	S	F	D	L	A	P	M	G	G	P	D	F	S	T	P	R	G	L	G	A	F	V	L	A	L	K	P	E	A	F	L	E	R	D	V	F	D	E	S	M	K	R	Y	L	E	V	L	R	G	S	P	A	R	E	D	C	K	V	M	A	P	G	D	R	E
Template Known Secondary structure									T	T	T	T	S				G	G	G	S			S	S	S	S			S	S													G	G	G	T	S																			S			S	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	T	R	R	E	R	Q	K	Q	G	I	P	L	D	A	G	S	W	Q	A	I	C	D	A	A	R	Q	I	G	M	P	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	A	V	A	A	K	R	E	R	E	G	A	P	V	D	P	V	T	R	A	A	F	S	E	L	A	E	K	F	S	V	S	P	P
Template Known Secondary structure											T																				T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions