Job Description P30178 Confidence 100.00% Date Thu Jan 5 11:46:15 GMT 2012 Rank 9 Aligned Residues 330 % Identity 32% Template c1v9nA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: structure of malate dehydrogenase from pyrococcus horikoshii ot3 Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	G	H	R	F	D	A	Q	T	L	H	S	F	I	Q	A	V	F	R	Q	M	G	S	E	E	Q	E	A	K	L	V	A	D	H	L	I	A	A	N	L	A	G	H	D	S	H	G	I	G	M	I	P	S	Y	V	R	S	W	S	Q	G	H	L	Q	I	N	H	H	A	K	T	V	K	E	A	G	A	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	Y	I	R	V	P	K	D	R	L	F	S	F	I	V	R	V	L	T	K	L	G	V	P	E	E	D	A	K	I	V	A	D	N	L	V	X	A	D	L	R	G	V	E	S	H	G	V	Q	R	L	K	R	Y	V	D	G	I	I	S	G	G	V	N	L	H	P	K	I	R	V	I	R	E	G	P	S	Y	A
Template Known Secondary structure		T	T																				T	T																			T	T		G	G	G	S	G	G	G											T	S	S	B	S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	D	G	D	R	A	F	G	Q	V	A	A	H	E	A	M	A	L	G	I	E	K	A	H	Q	H	G	I	A	A	V	A	L	H	N	S	H	H	I	G	R	I	G	Y	W	A	E	Q	C	A	A	A	G	F	V	S	I	H	F	V	S	V	V	G	I	P	M	V	A	P	F	H	G	R	D	S	R	F	G
Query Conservation
Alig confidence																																																																.	.
Template Conservation																																																																.	.
Template Sequence		L	I	D	G	D	E	G	L	G	Q	V	V	G	Y	R	S	X	K	L	A	I	K	K	A	K	D	T	G	I	G	I	V	I	A	R	N	S	N	H	Y	G	I	A	G	Y	Y	A	L	X	A	A	E	E	G	X	I	G	I	S	X	T	N	.	.	S	R	P	L	V	A	P	T	G	G	I	E	R	I	L	G
Template Known Secondary structure						T	T	B																					S													S		T									T	T	T	S								.	.		S	S		B			T	T			S			B
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.								.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.
Query Sequence		T	N	P	F	C	V	V	F	P	R	K	D	N	F	P	L	L	L	D	Y	A	T	S	A	I	A	F	G	K	T	R	V	A	W	H	K	G	V	P	V	P	P	G	C	L	I	D	V	N	G	V	P	T	T	N	P	A	V	M	Q	E	S	P	L	G	S	L	L	T	F	A	.	.	.	.	.	.	.	E	H
Query Conservation																																																																									.	.	.	.	.	.	.
Alig confidence															.																		.	.	.	.	.	.	.	.	.	.	.	.																				.	.								.	.	.	.	.	.	.
Template Conservation															.																		.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		T	N	P	I	A	L	A	A	P	T	K	D	K	.	P	F	L	L	D	X	A	T	S	V	V	P	I	G	K	L	E	.	.	.	.	.	.	.	.	.	.	.	.	W	A	I	N	R	E	G	N	I	T	T	K	V	E	E	V	F	N	G	.	.	G	A	L	L	P	L	G	G	F	G	E	L	L	G	G	H
Template Known Secondary structure												S	S	S	.								S	B	S	S		T	T	T			.	.	.	.	.	.	.	.	.	.	.	.							S	S	S				S	S	T	T	T	T	T	.	.			B		B	T	T		S	S	S	T	T	S
Template Predicted Secondary structure															.																		.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.													.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																																						.																.
Query SS confidence																																																						.																.
Query Sequence		K	G	Y	A	L	A	A	M	C	E	I	L	G	G	A	L	S	G	G	K	T	T	H	Q	E	T	L	Q	T	S	P	D	A	I	L	N	C	M	T	T	I	I	I	N	P	E	L	F	G	A	P	D	.	C	N	A	Q	T	E	A	F	A	E	W	V	K	A	S	.	P	H	D	D	D	K	P	I	L	L	P
Query Conservation																																																						.																.
Alig confidence																																	.																					.																.
Template Conservation																																	.
Template Sequence		K	G	Y	G	L	S	L	X	V	D	I	L	S	G	I	L	S	G	G	T	W	S	K	Y	V	K	N	T	S	E	K	.	G	S	N	V	C	H	F	F	X	V	I	D	I	E	H	F	I	P	L	E	E	F	K	E	K	I	S	Q	X	I	E	E	I	K	S	S	R	K	H	P	E	F	E	R	I	W	I	H
Template Known Secondary structure															T	T	T	T	T	S			G	G	G				T	T	S	T	.	T												G	G	G	T	S																		T	S				T	T		S					T
Template Predicted Secondary structure																																	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	W	E	V	N	T	R	R	E	R	Q	K	Q	G	I	P	L	D	A	G	S	W	Q	A	I	C	D	A	A	R	Q	I	G	M	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	K	G	F	L	T	X	E	T	R	L	K	L	G	I	P	I	Y	R	K	V	L	E	E	L	N	E	I	A	K	R	V	G	V	E	G
Template Known Secondary structure		T																																	T	S
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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