Job Description P16384 Confidence 100.00% Date Thu Jan 5 11:35:04 GMT 2012 Rank 4 Aligned Residues 297 % Identity 26% Template c3eplA_ PDB info PDB header:transferase/rna Chain: A: PDB Molecule:trna isopentenyltransferase; PDBTitle: crystallographic snapshots of eukaryotic2 dimethylallyltransferase acting on trna: insight into trna3 recognition and reaction mechanism Resolution 3.60 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	A	I	F	L	M	G	P	T	A	S	G	K	T	A	L	A	I	E	L	R	K	I	L	P	V	E	L	I	S	V	D	S	A	L	I	Y	K	G	M	D	I	G	T	A	K	P	N	A	E	E	L	L	A	A	P	H	R	L	L	D	I	R	D	P	S	Q	A	Y	S	A	A	D	F	R	R	D	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	V	I	V	I	A	G	T	T	G	V	G	K	S	Q	L	S	I	Q	L	A	Q	K	F	N	G	E	V	I	N	S	D	S	M	Q	V	Y	K	D	I	P	I	I	T	N	K	H	P	L	Q	E	R	E	G	I	P	H	H	V	M	N	H	V	D	W	S	E	E	Y	Y	S	H	R	F	E	T	E	C	M
Template Known Secondary structure											S	S	S													T	T		B						T	T	T	S	S	S	S										G	G	G	G	T	T					S		S		S		S	S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	M	A	D	I	T	A	A	G	R	I	P	L	L	V	G	G	T	M	L	Y	F	K	A	L	L	E	G	L	S	P	L	P	S	A	D	P	E	V	R	A	R	I	E	Q	Q	A	A	E	Q	G	W	E	S	L	H	R	Q	L	Q	E	V	D	P	V	A	A	A	R	I	H	P	N	D	P	Q	R	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	I	E	D	I	H	R	R	G	K	I	P	I	V	V	G	G	T	H	Y	Y	L	Q	T	L	F	N	K	R	V	D	T	K	S	S	E	R	K	L	T	R	K	Q	L	D	I	L	E	S	T	D	P	D	V	I	Y	N	T	L	V	K	C	D	P	D	I	A	T	K	Y	H	P	N	D	Y	R	R	V	Q
Template Known Secondary structure									T	T	T			B					S		T	T	G	G	G	G	G	B	S		S			T	T	T														T		S												S							T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.							.	.	240	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.
Query Sequence		R	A	L	E	V	F	F	I	S	G	K	T	L	T	E	L	T	Q	T	S	G	D	A	L	P	Y	Q	V	H	Q	F	A	I	A	P	A	S	R	E	L	L	H	Q	R	I	E	Q	R	F	H	Q	M	L	A	S	G	F	E	A	E	V	R	A	L	F	A	R	G	.	.	.	.	.	.	D	L	H	T	D	L
Query Conservation																																																																						.	.	.	.	.	.
Alig confidence																																			.																																			.	.	.	.	.	.
Template Conservation																																			.
Template Sequence		R	M	L	E	I	Y	Y	K	T	G	K	K	P	S	E	T	F	N	E	Q	K	I	T	L	K	F	D	T	L	F	L	W	L	.	Y	S	K	P	E	P	L	F	Q	R	L	D	D	R	V	D	D	M	L	E	R	G	A	L	Q	E	I	K	Q	L	Y	E	Y	Y	S	Q	N	K	F	T	P	E	Q	C	E	N
Template Known Secondary structure											S	S								T					B	S	S								.																					T	T														G	G	G			T	T	S	S	S	S
Template Predicted Secondary structure																																			.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.							290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.
Query Sequence		P	S	I	R	C	V	G	Y	R	Q	M	W	S	Y	L	E	G	E	I	S	Y	D	E	M	V	Y	R	G	V	C	A	T	R	Q	L	A	K	R	Q	I	T	W	L	R	G	W	.	.	.	.	.	.	E	G	V	H	W	L	D	S	E	K	P	E	Q	A	R	D	E	V	L	Q
Query Conservation																																																.	.	.	.	.	.
Alig confidence																					.	.																										.	.	.	.	.	.
Template Conservation																					.	.
Template Sequence		G	V	W	Q	V	I	G	F	K	E	F	L	P	W	L	T	V	K	L	.	.	E	D	C	I	E	R	M	K	T	R	T	R	Q	Y	A	K	R	Q	V	K	W	I	K	K	M	L	I	P	D	I	K	G	D	I	Y	L	L	D	A	T	D	L	S	Q	W	D	T	N	A	S	Q
Template Known Secondary structure		S	G	G	G	S	T	T	T	G	G	G	G	G	G					S	.	.																									T					T	T	T								S		T	T	S					T
Template Predicted Secondary structure																					.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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