Job Description P16384 Confidence 97.29% Date Thu Jan 5 11:35:04 GMT 2012 Rank 124 Aligned Residues 169 % Identity 20% Template c3bosA_ PDB info PDB header:hydrolase regulator,dna binding protein Chain: A: PDB Molecule:putative dna replication factor; PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution Resolution 1.75 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	S	L	P	K	A	I	F	L	M	G	P	T	A	S	G	K	T	A	L	A	I	E	L	R	K	I	L	P	V	E	L	I	S	V	D	S	A	L	I	Y	K	G	M	D	I	G	T	A	K	P	N	A	E	E	L	L	A	A	P	H	R	L	L	D	I	R	D	P	S	Q	A	Y	S	A	A	D	F	R
Query Conservation
Alig confidence																																						.	.	.	.
Template Conservation																																						.	.	.	.
Template Sequence		S	G	D	G	V	Q	A	I	Y	L	W	G	P	V	K	S	G	R	T	H	L	I	H	A	A	C	A	R	A	N	E	L	E	R	R	S	.	.	.	.	F	Y	I	P	L	G	I	H	A	S	I	S	T	A	L	L	E	G	L	E	Q	F	D	L	I	C	I	D	D	V	D	A	V	A	G	H	P	L	W	E
Template Known Secondary structure			T		S		S							S	T	T	S	S															T	T				.	.	.	.					G	G	G	G	G	G	S		G	G	G	G	T	T	G	G	G	S	S						T	G	G	G	G	T	T
Template Predicted Secondary structure																																						.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.					.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.										.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.							.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.							.	.	.
Query Sequence		R	D	A	L	A	E	M	A	D	I	T	A	A	G	R	I	P	L	L	V	G	G	T	M	L	Y	.	.	.	.	.	.	.	.	.	F	K	A	L	L	E	.	.	.	G	L	S	P	L	P	S	A	D	P	E	V	R	A	R	I	E	Q	Q	A	A	E	Q	G	W	E	S	L	H	R	Q	L	Q	E	V	D
Query Conservation																												.	.	.	.	.	.	.	.	.							.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.							.	.	.																																				.
Template Conservation																																																																																	.
Template Sequence		E	A	I	F	D	L	Y	N	R	V	A	E	Q	K	R	G	S	L	I	V	S	A	S	A	S	P	X	E	A	G	F	V	L	P	D	L	V	S	R	X	H	W	G	L	T	Y	Q	L	Q	P	X	X	D	D	E	K	L	A	A	L	Q	R	R	A	A	X	R	G	L	Q	L	P	E	D	V	G	R	F	L	.
Template Known Secondary structure																S								S	S		T	T	T	T	T													S										G	G	G												T	T												.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.					.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		P	V	A	A	A	R	I	H	P	N	D	P	Q	R	L	S	R	A	L	.	.	.	.	E	V	F	F	I	S	G	K	T	L	T
Query Conservation																					.	.	.	.
Alig confidence		.	.	.				.													.	.	.	.
Template Conservation		.	.	.				.
Template Sequence		.	.	.	L	N	R	.	X	A	R	D	L	R	T	L	F	D	V	L	D	R	L	D	K	A	S	X	V	H	Q	R	K	L	T
Template Known Secondary structure		.	.	.				.	T	T	T																				T
Template Predicted Secondary structure		.	.	.				.
Template SS confidence
					202	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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