Job Description P16384 Confidence 97.52% Date Thu Jan 5 11:35:04 GMT 2012 Rank 94 Aligned Residues 168 % Identity 14% Template c2z4rB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa Resolution 3.05 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.																											.	.	.	.	.
Query SS confidence																															.	.	.	.	.																											.	.	.	.	.
Query Sequence		K	A	S	L	P	K	A	I	F	L	M	G	P	T	A	S	G	K	T	A	L	A	I	E	L	R	K	I	L	.	.	.	.	.	P	V	E	L	I	S	V	D	S	A	L	I	Y	K	G	M	D	I	G	T	A	K	P	N	A	E	.	.	.	.	.	E	L	L	A	A	P	H	R	L	L	D	I	R	D	P
Query Conservation																															.	.	.	.	.																											.	.	.	.	.
Alig confidence																															.	.	.	.	.																											.	.	.	.	.
Template Conservation
Template Sequence		H	P	G	R	Y	N	P	L	F	I	Y	G	G	V	G	L	G	K	T	H	L	L	Q	S	I	G	N	Y	V	V	Q	N	E	P	D	L	R	V	M	Y	I	T	S	E	K	F	L	N	D	L	V	D	S	M	K	E	G	K	L	N	E	F	R	E	K	Y	R	K	K	V	D	I	L	L	I	D	D	V	Q	F
Template Known Secondary structure		S	T	T	T	S								S	S	S	S	S																S	S	S	S																				T	S										T	T	T		S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.										.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.															.	.																						.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.															.	.																						.	.	.
Query Sequence		S	Q	A	Y	S	A	A	D	F	R	R	D	A	L	A	E	M	A	D	I	T	A	A	G	R	I	P	L	L	V	G	.	.	.	.	.	.	.	.	.	G	T	M	L	Y	F	K	A	L	L	E	G	L	S	.	.	P	L	P	S	A	D	P	E	V	R	A	R	I	E	Q	Q	A	A	E	Q	G	.	.	.
Query Conservation																																	.	.	.	.	.	.	.	.	.															.	.																						.	.	.
Alig confidence			.	.																													.	.	.	.	.	.	.	.	.															.	.																						.	.	.
Template Conservation			.	.
Template Sequence		L	.	.	I	G	K	T	G	V	Q	T	E	L	F	H	T	F	N	E	L	H	D	S	G	K	Q	I	V	I	C	S	D	R	E	P	Q	K	L	S	E	F	Q	D	R	L	V	S	R	F	Q	M	G	L	V	A	K	L	E	P	P	D	E	E	T	R	K	S	I	A	R	K	M	L	E	I	E	H	G	E	L
Template Known Secondary structure		G	.	.	T	T																	T	T	T								S	S		T	T	T		S	S											S	S																									T
Template Predicted Secondary structure			.	.
Template SS confidence
		206			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.	.
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence		W	E	S	L	H	R	Q	L	Q	E	V	D	P	V	A	A	A	R	I	H	P	N	D	P	Q	R	L	S	R	A	L	E	V	F	.	.	.	.	F	I	S	G	K	T	L	T
Query Conservation																																				.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.
Template Sequence		P	E	E	V	L	N	F	V	A	E	N	.	.	.	.	.	.	.	.	V	D	D	N	L	R	R	L	R	G	A	I	I	K	L	L	V	Y	K	E	T	T	G	K	E	V	D
Template Known Secondary structure			T	T									.	.	.	.	.	.	.	.			S																			S	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.									.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions