Job Description P16384 Confidence 98.23% Date Thu Jan 5 11:35:04 GMT 2012 Rank 19 Aligned Residues 172 % Identity 17% Template c1sxjA_ PDB info PDB header:replication Chain: A: PDB Molecule:activator 1 95 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.											.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.
Query Sequence		S	D	I	S	K	A	S	L	P	K	A	I	F	L	M	G	P	T	A	S	G	K	T	A	L	A	I	E	L	R	K	I	L	P	V	E	L	I	S	V	D	.	.	.	.	.	.	.	.	.	.	S	A	L	I	Y	K	G	M	D	I	G	T	A	K	P	N	A	E	E	L	L	A	A	P	H	R	L	L	D
Query Conservation																																											.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	K	D	G	S	G	V	F	R	A	A	M	L	Y	G	P	P	G	I	G	K	T	T	A	A	H	L	V	A	Q	E	L	G	Y	D	I	L	E	Q	N	A	S	D	V	R	S	K	T	L	L	N	A	G	V	K	N	A	L	D	N	M	S	V	V	G	Y	F	K	H	Q	N	L	N	G	K	H	F	V	I
Template Known Secondary structure				T	T	S	T	T	S		S							S	T	T	S	S												T	T								T	T	S										T	G	G	G	G	T	T				S	T	T	T	T	T				S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.							.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.
Query Sequence		I	R	D	P	S	Q	A	Y	S	A	A	D	F	R	R	D	A	L	A	E	M	A	D	I	T	A	A	G	R	I	P	L	L	V	G	G	T	M	L	Y	.	.	.	.	.	.	F	K	A	L	L	E	G	L	S	P	L	P	S	A	D	P	E	V	R	A	R	I	E	Q	Q	A	A	E	Q	G	W	E	S	L
Query Conservation																																										.	.	.	.	.	.
Alig confidence														.	.																											.	.	.	.	.	.																															.	.	.	.
Template Conservation														.	.																																																															.	.	.	.
Template Sequence		I	M	D	E	V	D	G	M	S	G	G	D	.	.	R	G	G	V	G	Q	L	A	Q	F	C	R	K	T	S	T	P	L	I	L	I	C	N	E	R	N	L	P	K	M	R	P	F	D	R	V	C	L	D	I	Q	F	R	R	P	D	A	N	S	I	K	S	R	L	M	T	I	A	I	R	E	K	.	.	.	.
Template Known Secondary structure					S	G	G	G			T	T	S	.	.	T	T													S	S							S		T	T	S	S	T	T	G	G	G	T	T	T	S																									T	.	.	.	.
Template Predicted Secondary structure														.	.																																																															.	.	.	.
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.	.			.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		H	R	Q	L	Q	E	V	D	P	V	A	A	A	R	I	H	P	.	.	.	N	D	P	Q	R	L	S	R	A	L	E	V	F	F	I	S	G	K	T	L	T
Query Conservation																			.	.	.
Alig confidence		.	.	.	.														.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	F	K	L	D	P	N	V	I	D	R	L	I	Q	T	T	R	G	D	I	R	Q	V	I	N	L	L	S	T	I	S	T	T	T	K	T	I	N
Template Known Secondary structure		.	.	.	.					T	T									T	T	T										T						S	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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