Job Description P23871 Confidence 20.76% Date Thu Jan 5 11:40:08 GMT 2012 Rank 100 Aligned Residues 180 % Identity 13% Template c2c4kD_ PDB info PDB header:regulatory protein Chain: D: PDB Molecule:phosphoribosyl pyrophosphate synthetase- PDBTitle: crystal structure of human phosphoribosylpyrophosphate2 synthetase-associated protein 39 (pap39) Resolution 2.65 Å

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		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.						.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.											.	170	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	D	E	L	L	A	E	H	V	D	H	I	V	V	L	P	L	Y	P	Q	F	S	C	S	T	V	G	.	.	.	.	.	A	V	W	D	E	L	A	R	I	L	A	R	K	R	S	I	P	G	I	S	F	I	R	D	Y	A	D	N	H	D	Y	.	.	.	.	.	.	.	.	.	.	I	N	A	L	A	N
Query Conservation																														.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	A	Y	A	L	K	T	A	C	A	R	N	I	I	G	V	I	P	Y	F	P	Y	S	K	Q	S	K	M	R	K	R	G	S	I	V	C	K	L	L	A	S	M	L	A	K	A	G	L	T	H	I	I	T	M	D	L	H	Q	K	E	I	Q	G	F	F	S	F	P	V	D	N	L	R	A	S	P	F	L	L	Q
Template Known Secondary structure									T	T		S							S	S		T	T	T	T	T	T	S			S	S	S														T									S		S	S	G	G	G	G	G	S		S	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	V	R	A	S	F	A	K	H	G	E	P	D	L	L	L	L	S	Y	H	G	I	P	Q	R	Y	A	D	E	G	D	D	Y	P	Q	R	C	R	T	T	T	R	E	L	A	S	A	L	G	M	A	P	E	K	V	M	M	T	F	Q	S	R	F	G	R	E	P	W	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		Y	I	Q	E	E	I	.	P	N	Y	R	N	A	V	I	V	A	K	S	P	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	R	A	Q	S	Y	A	E	R	L	R	L	G	.	.	.	L	A	V	I	H	P	P	I	T	V	V	G	D	V	G	G	R	I	A	I	I	V	D	D	I	I
Template Known Secondary structure							S	.	T	T	G	G	G						S	S	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T			.	.	.												S			T	T								S
Template Predicted Secondary structure								.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
		160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180																.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
			243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.												.
Predicted Secondary structure		.																									.	.																																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																									.	.																																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	L	M	P	Y	T	D	E	T	L	K	M	L	G	E	K	G	V	G	H	I	Q	V	M	C	.	.	P	G	F	A	A	D	C	L	E	T	L	E	E	I	A	E	Q	N	R	E	V	F	L	G	A	G	G	K	K	Y	E	Y	I	P	A	L	N	A	T	P	E	.	.	.	.	.	.	.	.	.	.	.	H
Query Conservation		.																									.	.																																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																									.	.												.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	D	V	E	S	F	V	A	A	A	E	I	L	K	E	R	G	A	Y	K	I	Y	V	M	A	T	H	G	I	L	S	A	E	A	P	R	L	I	.	.	.	.	.	.	.	.	.	.	.	E	E	S	S	V	D	E	V	V	V	T	N	T	V	P	H	E	V	Q	K	L	Q	C	P	K	I	K	T	V	D	I
Template Known Secondary structure		S	S	T												T	T	T															T	T						.	.	.	.	.	.	.	.	.	.	.			S	S								B	T	S										T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.												.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	M	M	A	N	L	V	A	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	I	L	S	E	A	I	R	R	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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