 |
Job Description | P23882 | Confidence | 53.78% | Date | Thu Jan 5 11:40:18 GMT 2012 |
Rank | 460 | Aligned Residues | 66 |
% Identity | 17% | Template | c3dzbA_ |
PDB info |
PDB header:biosynthetic protein | Chain: A: PDB Molecule:prephenate dehydrogenase; |
PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 thermophilus
|
Resolution | 2.46 Å |
|
 |
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | I | I | F | A | G | T | P | D | F | A | A | R | H | L | D | A | L | L | S | S | G | H | N | V | V | G | V | F | T | Q | P | D | R | P | A | G | R | G | K | K | L | M | P | S | P | V | K | V | L | A | E | E | K | G | L | P | V | F | Q | P | V | S | L | R | P | Q | E | N | Q | Q | L | V | A | E | L | Q | A | D | V |
Query Conservation |   |
|
|   |
|   |
|
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |
|   |   |
|
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
Template Conservation |   |
  |
|   |
|
|
|   |
|   |
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |   |   |   |   |   | . | . |   |   |   |   |   |   |   | . | . | . | . | . |   |   |
|   |
Template Sequence |   |
T | I | Y | I | A | G | L | G | L | I | G | G | S | L | A | L | G | I | K | R | D | H | P | D | Y | E | I | L | G | Y | N | R | S | D | Y | S | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | I | A | L | E | R | G | I | V | D | R | A | T | G | . |
. |
D | F | K | E | F | A | P | . |
. |
. |
. |
. |
L | A | D | V |
Template Known Secondary structure |   |
 |  |  |  | S |
|
| S |  |  |  |  |  |  |  |  |  |  |  | T | T |
| T | T | S |  |  |  |  |  |
| S |
|  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  | T |
| S |
| S |  |  |  | S | . | . |
|  |  |  |  | G | G | . | . | . | . | . | G |
| S |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
|
|
|
|  |  |  |  |
| . | . |
|  |  |  |  |  |  | . | . | . | . | . |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 50 | . | . | . | . | . | |
|
. | . | . | . | 60 | . | . | |
|
|
|
|
. | . | . | . |
  |
  |   |
86 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
Query SS confidence |   |
|
|
|
|
Query Sequence |   |
M | V | V | V |
Query Conservation |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
Template Conservation |   |
|   |
|
|
Template Sequence |   |
I | I | L | A |
Template Known Secondary structure |   |
 |  |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |
Template SS confidence |   |
|
|
|
|
  |   |
67 | . | . | 70 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|