Job Description P23882 Confidence 48.59% Date Thu Jan 5 11:40:18 GMT 2012 Rank 495 Aligned Residues 81 % Identity 20% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		2	.	.	.	.	.	.	.	10							.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure											.	.	.	.	.	.																																																														.	.	.	.
Query SS confidence											.	.	.	.	.	.																																																														.	.	.	.
Query Sequence		S	E	S	L	R	I	I	F	A	.	.	.	.	.	.	G	T	P	D	F	A	A	R	H	L	D	A	L	L	S	S	G	H	N	V	V	G	V	F	T	Q	P	D	R	P	A	G	R	G	K	K	L	M	P	S	P	V	K	V	L	A	E	E	K	G	L	P	V	F	Q	P	V	S	L	R	P	.	.	.	.
Query Conservation											.	.	.	.	.	.																																																														.	.	.	.
Alig confidence											.	.	.	.	.	.																																				.	.	.	.	.	.																					.	.	.	.
Template Conservation																																																				.	.	.	.	.	.
Template Sequence		T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	.	.	.	.	.	.	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I
Template Known Secondary structure		S	S	S	S								S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S				.	.	.	.	.	.								T	T							S	S				T	T
Template Predicted Secondary structure																																																				.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.							.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
			72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	Q	E	N	Q	Q	L	V	A	E	L	Q	A	D	V	M	V	V
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V
Template Known Secondary structure												T	T		S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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