Job Description P08204 Confidence 100.00% Date Thu Jan 5 11:00:58 GMT 2012 Rank 3 Aligned Residues 509 % Identity 22% Template c3gg4B_ PDB info PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis Resolution 2.00 Å

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		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		M	A	.	I	A	I	G	L	D	F	G	S	D	S	V	R	A	L	A	V	D	C	A	T	G	E	E	I	A	T	S	V	E	W	Y	P	R	W	Q	K	G	Q	F	C	D	A	P	N	N	Q	F	R	H	H	P	R	D	Y	I	E	S	M	E	A	A	L	K	T	V	L	A	E	L	S	V	E	Q	R	A	A
Query Conservation				.
Alig confidence				.																			.															.	.	.	.	.	.																																					.
Template Conservation																							.															.	.	.	.	.	.																																					.
Template Sequence		L	A	S	Y	F	I	G	V	D	V	G	T	G	S	A	R	A	G	V	F	D	.	L	Q	G	R	X	V	G	Q	A	S	R	E	I	T	.	.	.	.	.	.	X	F	K	P	K	A	D	F	V	E	Q	S	S	E	N	I	W	Q	A	V	C	N	A	V	R	D	A	V	N	Q	A	D	I	N	P	I	.	Q
Template Known Secondary structure													S	S									.	T	T													.	.	.	.	.	.		B		S	S	T	T																									T			G	G	.	G
Template Predicted Secondary structure																							.															.	.	.	.	.	.																																					.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.							.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	G	I	G	V	D	S	T	G	S	T	P	A	P	I	D	A	D	G	N	V	L	A	L	R	P	E	F	A	E	N	P	N	A	M	F	V	L	W	K	D	H	T	A	V	E	E	A	E	E	I	T	R	L	C	H	A	P	G	N	V	D	Y	S	R	Y	I	G	G	I	Y	S	S	E	W	F	W	A	K
Query Conservation
Alig confidence												.														.	.																																.	.	.	.	.
Template Conservation												.														.	.																																.	.	.	.	.
Template Sequence		V	K	G	L	G	F	D	A	T	C	.	S	L	V	V	L	D	K	E	G	N	P	L	T	.	.	V	S	P	S	G	R	N	E	Q	N	V	I	V	W	X	D	H	R	A	I	T	Q	A	E	R	I	N	A	T	K	H	.	.	.	.	.	P	V	L	E	F	V	G	G	V	I	S	P	E	X	Q	T	P	K
Template Known Secondary structure											S	.							T	T	S		B			.	.		S	T	T			T	T						T	T			T	T											T		.	.	.	.	.	G	G	G	G	G	G	T	T				T	T	S
Template Predicted Secondary structure												.														.	.																																.	.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.						.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	H	V	T	R	Q	D	S	A	V	A	Q	S	A	A	S	W	I	E	L	C	D	W	V	P	A	L	L	S	G	T	T	R	P	Q	D	I	R	R	G	R	C	S	A	G	H	K	S	L	W	H	E	S	W	G	G	L	P	P	A	S	F	F	D	E	L	D	P	I	L	N	R	H	L	P	S	P	L	F
Query Conservation
Alig confidence																																												.	.	.	.	.	.																				.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.																				.	.	.	.	.	.
Template Sequence		L	L	W	L	K	Q	H	X	P	N	T	W	S	N	V	G	H	L	F	D	L	P	D	F	L	T	W	R	A	T	K	D	E	T	R	S	L	C	S	T	V	C	.	.	.	.	.	.	K	W	T	Y	L	G	H	E	D	R	W	D	P	S	Y	F	K	L	V	.	.	.	.	.	.	G	L	A	D	L	L	D
Template Known Secondary structure																																S												.	.	.	.	.	.		S			B	T	T	T	T	B										.	.	.	.	.	.	T		G	G	G	G
Template Predicted Secondary structure																																												.	.	.	.	.	.																				.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.							.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.							.	.	.	.	210	.	.
		240	.	.	.	.	.	.	.	.	.									250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure												.	.	.	.	.	.	.	.																																				.
Query SS confidence												.	.	.	.	.	.	.	.																																				.
Query Sequence		T	D	T	W	T	A	D	I	P	V	.	.	.	.	.	.	.	.	G	T	L	C	P	E	W	A	Q	R	L	G	L	P	E	S	V	V	I	S	G	G	A	F	D	C	H	M	G	A	V	G	A	G	A	.	Q	P	N	A	L	V	K	V	I	G	T	S	T	C	D	I	L	I	A	D	K	Q	S	V	G	E
Query Conservation												.	.	.	.	.	.	.	.																																				.
Alig confidence												.	.	.	.	.	.	.	.																																				.
Template Conservation
Template Sequence		N	N	A	A	K	I	G	A	T	V	K	P	X	G	A	P	L	G	H	G	L	S	Q	R	A	A	S	E	X	G	L	I	P	G	T	A	V	S	V	S	I	I	D	A	H	A	G	T	I	G	I	L	G	A	S	D	R	R	I	A	L	I	G	G	T	S	T	A	H	X	A	X	S	R	S	A	H	F	I	S
Template Known Secondary structure					T	T	T		S					T	T		B		T	T	S	S									T			T	T				B														T	T											S	S	S								S	S					T
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		R	A	V	K	G	I	C	G	Q	V	D	G	S	V	V	P	G	F	I	G	L	E	A	G	Q	S	A	F	G	D	I	Y	A	W	F	G	R	V	L	G	W	P	L	E	Q	L	A	A	Q	H	P	E	L	K	T	Q	I	N	A	S	Q	K	Q	L	L	P	A	L	T	E	A	W	A	K	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence				.	.	.	.																																														.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation				.	.	.	.																																														.	.	.	.	.	.	.	.
Template Sequence		G	I	.	.	.	.	W	G	P	Y	Y	S	A	I	L	P	E	Y	W	L	N	E	G	G	Q	S	A	T	G	A	L	I	D	H	I	I	Q	S	H	P	C	Y	P	A	L	L	E	Q	A	K	N	.	.	.	.	.	.	.	.	K	G	E	T	I	Y	E	A	L	N	Y	I	L	R	Q	X	A	G	E	P	E
Template Known Secondary structure		T	S	.	.	.	.						T	S	S	S	T	T									S		S											S	T	T											.	.	.	.	.	.	.	.	T	T																S	S	G	G
Template Predicted Secondary structure				.	.	.	.																																														.	.	.	.	.	.	.	.
Template SS confidence
		302	.					.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.									.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
			385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.				.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure		.																																										.	.	.
Query SS confidence		.																																										.	.	.
Query Sequence		.	N	P	S	L	D	H	L	P	V	V	L	D	W	F	N	G	R	R	T	P	N	A	N	Q	R	L	K	G	V	I	T	D	L	N	L	A	T	D	A	P	L	.	.	.	L	F	G	G	L	I	A	A	T	A	F	G	A	R	A	I	M	E	C	F	T	D	Q	G	I	A	V	N	N	V	M	A	L	G	G
Query Conservation		.																																										.	.	.
Alig confidence		.																																										.	.	.
Template Conservation
Template Sequence		N	I	A	F	L	T	N	D	I	H	X	L	P	Y	F	H	G	N	R	S	P	R	A	N	P	N	L	T	G	I	I	T	G	L	K	L	S	T	T	P	E	D	X	A	L	R	Y	L	A	T	I	Q	A	L	A	L	G	T	R	H	I	I	E	T	X	N	Q	N	G	Y	N	I	D	T	X	X	A	S	G	G
Template Known Secondary structure		G	S	G	G	G	G	T	T							T	T		B		T	T	T		B	T	T										S			S																												T	T	T											T
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530		.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		I	A	R	K	N	Q	V	I	M	Q	A	C	C	D	V	L	N	R	P	L	Q	I	V	A	S	D	Q	C	C	A	L	G	A	A	I	F	A	A	V	A	A	K	V	H	A	D	I	P	S	A	Q	Q	K	M	A	S	A	V	E	K	T	L	Q	P	C	S	E	Q	A	Q	.	R	F	E	Q	L	Y	R	R	Y
Query Conservation																																																																								.
Alig confidence			.																																																							.														.
Template Conservation			.																																																							.
Template Sequence		G	.	T	K	N	P	I	F	V	Q	E	H	A	N	A	T	G	C	A	X	L	L	P	E	E	S	E	A	X	L	L	G	S	A	X	X	G	T	V	A	A	G	V	F	E	S	L	P	E	A	X	A	A	X	S	R	.	I	G	K	T	V	T	P	Q	T	N	K	I	K	A	Y	Y	D	R	K	Y	R	V	F
Template Known Secondary structure		T	.	T	T													T	S						S	S	S															T	T	S	S	S	S											.
Template Predicted Secondary structure			.																																																							.
Template SS confidence
		450		.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.		.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
		540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	W	A	M	S	A	E	Q	H	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	Q	X	Y	H	D	H	X	R	Y	Q	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		528	.	530	.	.	.	.	.	.	.	.	.