 |
Job Description | P08204 | Confidence | 96.93% | Date | Thu Jan 5 11:00:58 GMT 2012 |
Rank | 75 | Aligned Residues | 90 |
% Identity | 10% | Template | c2ivoC_ |
PDB info |
PDB header:hydrolase | Chain: C: PDB Molecule:up1; |
PDBTitle: structure of up1 protein
|
Resolution | 2.9 Å |
|
 |
  |   |
418 | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | |
|
|
. | . | . | 480 | . | . | . | . | |
|
|
|
. | . | . | . | . | 490 |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|  |  |  |  |  |
| . | . | . | . |
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
N | L | A | T | D | A | P | L | L | F | G | G | L | I | A | A | T | A | F | G | A | R | A | I | M | E | C | F | T | D | Q | G | I | A | V | N | N | V | M | A | L | G | G | I | A | R | K | N | Q | V | I | M | Q | A | C | C | D | V | L | . |
. |
. |
N | R | P | L | Q | I | V | A | . |
. |
. |
. |
S | D | Q | C | C | A |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |
|
|
|
|   |   |
|   |   |   |   |
|
|   |
|
|
|   | . | . | . |
|   |
|
|   |   |   |   | . | . | . | . |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |
|   |
|
|
|
|
|
|   | . |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |
|
|
|   |   |
Template Sequence |   |
S | G | K | Y | R | V | E | D | L | A | Y | S | F | Q | E | T | A | F | A | A | L | V | E | V | T | E | R | A | V | A | H | T | E | . |
K | D | E | V | V | L | V | G | G | V | A | A | . |
N | N | R | L | R | E | M | L | R | I | M | T | E | D | R | G | I | K | F | F | V | P | P | Y | D | L | C | R | D | N | G | A | M |
Template Known Secondary structure |   |
T |
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
| S |  |  |  |  |  | S | G | G | G | G | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |
|
|
| G | G | G | T | S | S |
| S |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |  |
|  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|  |  |  |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
212 | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | |
. | . | . | . | . | 250 | . | . | . | . | . | . | |
. | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . |
  |
  |   |
491 | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | G | A | A | I | F | A | A | V | A | A | K | V | H | A | D | I | P | S |
Query Conservation |   |
  |
|
|
|   |
|
|   |   |   |   |
|   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
Template Sequence |   |
I | A | Y | T | G | L | R | M | Y | K | A | G | I | S | F | R | L | E | E |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | T |
|
|
|
| G | G | G |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|