Job Description P08204 Confidence 100.00% Date Thu Jan 5 11:00:58 GMT 2012 Rank 12 Aligned Residues 482 % Identity 21% Template c2dpnB_ PDB info PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 Resolution 2.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	I	G	L	D	F	G	S	D	S	V	R	A	L	A	V	D	C	A	T	G	E	E	I	A	T	S	V	E	W	Y	P	R	W	Q	K	G	Q	F	C	D	A	P	N	N	Q	F	R	H	H	P	R	D	Y	I	E	S	M	E	A	A	L	K	T	V	L	A	E	L	S	V	E	Q	R	A	A	V	V	G
Query Conservation
Alig confidence																				.															.	.	.	.	.	.																																				.
Template Conservation																				.															.	.	.	.	.	.																																				.
Template Sequence		F	L	L	A	L	D	Q	G	T	T	S	S	R	A	I	L	F	T	.	L	E	G	R	P	V	A	V	A	K	R	E	F	R	.	.	.	.	.	.	Q	L	Y	P	K	P	G	W	V	E	H	D	P	L	E	I	W	E	T	T	L	W	A	A	R	E	V	L	R	R	A	G	A	E	A	.	G	E	V	L	A
Template Known Secondary structure										S	S									.	S	S	S												.	.	.	.	.	.		B		S	S	T	T																									T			T	.	T	T
Template Predicted Secondary structure																				.															.	.	.	.	.	.																																				.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.							.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		I	G	V	D	S	T	G	S	T	P	A	P	I	D	.	A	D	G	N	V	L	A	L	R	P	E	F	A	E	N	P	N	A	M	F	V	L	W	K	D	H	T	A	V	E	E	A	E	E	I	T	R	L	C	H	A	P	G	N	V	D	Y	S	R	Y	I	G	G	I	Y	S	S	E	W	F	W	A	K	I	L
Query Conservation																.
Alig confidence																.							.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Sequence		L	G	I	T	N	Q	R	E	T	T	L	L	W	D	R	K	T	G	K	P	L	.	.	.	.	.	.	.	.	.	.	.	H	N	A	I	V	W	Q	D	R	R	T	T	P	L	C	E	A	L	R	A	K	G	.	.	.	L	E	P	L	F	R	E	R	T	G	L	L	F	D	P	Y	F	S	G	T	K	L	V
Template Known Secondary structure								S	S							T	T	T	T			S	.	.	.	.	.	.	.	.	.	.	.	S					T	T														T	T	.	.	.							T	T	T	S			S		S	S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.												.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		162	.	.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																.	.	.	.																			.	.
Query SS confidence																.	.	.	.																			.	.
Query Sequence		H	V	T	R	Q	D	S	A	V	A	Q	S	A	A	.	.	.	.	S	W	I	E	L	C	D	W	V	P	A	L	L	S	G	T	T	R	.	.	P	Q	D	I	R	R	G	R	C	S	A	G	H	K	S	L	W	H	E	S	W	G	G	L	P	P	A	S	F	F	D	E	L	D	P	I	L	N	R	H	L	P
Query Conservation																.	.	.	.																			.	.
Alig confidence																.	.	.	.																			.	.									.	.	.	.	.	.																				.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.																				.	.	.	.	.	.
Template Sequence		W	L	L	E	N	V	P	G	L	K	A	R	A	E	G	G	G	V	A	F	G	T	V	D	T	W	L	I	W	N	L	T	G	G	K	V	H	A	T	D	P	T	N	A	S	R	.	.	.	.	.	.	T	L	L	F	N	L	H	T	L	A	W	D	P	E	L	L	E	A	L	.	.	.	.	.	.	G	I	P
Template Known Secondary structure							S	T	T					T	T	T	T	S															T	T	T	S				B							T	.	.	.	.	.	.	S	T	T	B		S	S	S	S	S	B								T	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.																				.	.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.							.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.							.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																																			.																				.
Query SS confidence																																																			.																				.
Query Sequence		S	P	L	F	T	D	T	W	T	A	D	I	P	V	G	T	L	C	P	E	W	A	Q	R	L	G	L	P	E	S	V	V	I	S	G	G	A	F	D	C	H	M	G	A	V	G	A	G	A	.	Q	P	N	A	L	V	K	V	I	G	T	S	T	C	D	I	L	I	A	.	D	K	Q	S	V	G	E	R	A	V
Query Conservation																																																			.																				.
Alig confidence																							.	.	.	.	.																								.																				.
Template Conservation																							.	.	.	.	.
Template Sequence		A	A	L	L	P	E	V	R	P	S	D	G	D	F	G	E	T	L	P	E	L	.	.	.	.	.	L	G	A	P	V	P	I	R	G	V	L	G	D	Q	Q	A	A	L	F	G	Q	A	A	L	G	G	G	E	G	K	C	T	Y	G	T	G	A	F	L	L	L	N	T	G	K	R	P	V	L	S	E	K	G	L
Template Known Secondary structure		T	T	S				B			T	T	S				B						.	.	.	.	.		S	S			B															T	T			S	T	T							S	S	S									S	S					S	S	S
Template Predicted Secondary structure																							.	.	.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.						230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	I	C	G	Q	V	D	G	S	V	V	P	G	F	I	G	L	E	A	G	Q	S	A	F	G	D	I	Y	A	W	F	G	R	V	L	G	W	P	L	E	Q	L	A	A	Q	H	P	E	L	K	T	Q	I	N	A	S	Q	K	Q	L	L	P	A	L	T	E	A	W	A	K	N	P	S	L	D	H	L	P	V
Query Conservation
Alig confidence												.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	T	V	A	W	S	L	G	G	.	.	R	A	T	Y	A	L	E	G	S	L	F	V	A	G	A	A	V	G	W	L	K	E	V	G	L	I	R	E	S	A	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	L	A	A	S	V	E	D	T	G	D	V	Y
Template Known Secondary structure										T	T	.	.											S		S	T								T	T	T	S	S	S	S	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				G	G	G		S	S		S	S
Template Predicted Secondary structure												.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.																							.	.	.	.	330	.	.	.	.	.	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		V	L	D	W	F	N	G	R	R	T	P	N	A	N	Q	R	L	K	G	V	I	T	D	L	N	L	A	T	D	A	P	L	L	F	G	G	L	I	A	A	T	A	F	G	A	R	A	I	M	E	C	F	T	D	.	Q	G	I	A	V	N	N	V	M	A	L	G	G	I	A	R	K	N	Q	V	I	M	Q	A	C
Query Conservation																																																								.
Alig confidence																																																								.																.
Template Conservation																																																																								.
Template Sequence		F	V	P	A	F	T	G	L	G	A	P	Y	W	D	P	Y	A	R	G	T	L	L	G	L	T	R	G	T	S	R	A	H	L	A	R	A	A	L	E	G	V	A	F	Q	V	R	D	V	V	L	A	M	E	E	E	A	G	V	R	L	K	V	L	K	A	D	G	G	M	A	.	Q	N	R	L	F	L	K	I	Q
Template Known Secondary structure						T	T				T	T	T			T	T										T	T																												S	S	S										S	G	G	G	.	G
Template Predicted Secondary structure																																																																								.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.		410	.	.	.	.	.	.	.	.
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	D	V	L	N	R	P	L	Q	I	V	A	S	D	Q	C	C	A	L	G	A	A	I	F	A	A	V	A	A	K	V	H	A	D	I	P	S	A	Q	Q	K	M	A	S	A	V	E	K	T	L	Q	P	C	S	E	Q	A	Q	R	F	E	Q	L	Y	R	R	Y	Q	Q	W	A	M	S	A	E	Q	H	Y	L	P
Query Conservation
Alig confidence																																								.	.					.														.
Template Conservation																																								.	.					.														.
Template Sequence		A	D	L	L	G	V	P	V	A	V	P	E	V	T	E	T	T	A	L	G	A	A	L	M	A	G	V	G	A	G	A	L	S	P	E	D	V	A	.	.	G	R	F	R	.	E	A	E	R	F	L	P	T	M	P	E	G	R	.	R	E	A	L	Y	R	R	W	R	E	A	V	E	R	A	K	G	W	A	R	E
Template Known Secondary structure						T	S						S																	T	T	S			T					.	.	T	T			.									S					.														T	T	T	T		S
Template Predicted Secondary structure																																								.	.					.														.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.			.	.	.	460		.	.	.	.	.	.	.	.	.	470	.	.	.		.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.