Job Description P08204 Confidence 100.00% Date Thu Jan 5 11:00:58 GMT 2012 Rank 4 Aligned Residues 487 % Identity 18% Template c2d4wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	A	I	G	L	D	F	G	S	D	S	V	R	A	L	A	V	D	C	A	T	G	E	E	I	A	T	S	V	E	W	Y	P	R	W	Q	K	G	Q	F	C	D	A	P	N	N	Q	F	R	H	H	P	R	D	Y	I	E	S	M	E	A	A	L	K	T	V	L	A	E	L	S	V	E	Q	R	A	A	V	V
Query Conservation
Alig confidence																					.															.	.	.	.	.	.																																				.
Template Conservation																					.															.	.	.	.	.	.																																				.
Template Sequence		D	Y	V	L	A	I	D	Q	G	T	T	S	S	R	A	I	V	F	D	.	H	S	G	E	I	Y	S	T	G	Q	L	E	H	D	.	.	.	.	.	.	Q	I	F	P	R	A	G	W	V	E	H	N	P	E	Q	I	W	N	N	V	R	E	V	V	G	L	A	L	T	R	G	N	L	T	H	.	E	D	I	A
Template Known Secondary structure											S	S									.	T	T	S												.	.	.	.	.	.		B		S	S	T	T																								T	T			G	.	G	G
Template Predicted Secondary structure																					.															.	.	.	.	.	.																																				.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.							.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		G	I	G	V	D	S	T	G	S	T	P	A	P	I	D	A	.	D	G	N	V	L	A	L	R	P	E	F	A	E	N	P	N	A	M	F	V	L	W	K	D	H	T	A	V	E	E	A	E	E	I	T	R	L	C	H	A	P	G	N	V	D	Y	S	R	Y	I	G	G	I	Y	S	S	E	W	F	W	A	K	I
Query Conservation																		.
Alig confidence																		.						.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Sequence		A	V	G	I	T	N	Q	R	E	T	A	V	V	W	D	K	T	T	G	K	P	V	.	.	.	.	.	.	.	.	.	.	.	Y	N	A	I	V	W	Q	D	T	R	T	Q	K	I	V	D	E	L	G	G	.	.	.	D	E	G	A	E	K	Y	K	S	I	V	G	L	P	L	A	T	Y	F	S	G	P	K	I
Template Known Secondary structure									S	S		B					T	T	T			B	S	.	.	.	.	.	.	.	.	.	.	.	S					T	T			T	T										.	.	.	S	S		G	G	G	G					S			S		T	T	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.												.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.					.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.						.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																		.	.	.	.																	.	.	.	.	.
Query SS confidence																		.	.	.	.																	.	.	.	.	.
Query Sequence		L	H	V	T	R	Q	D	S	A	V	A	Q	S	A	A	S	.	.	.	.	W	I	E	L	C	D	W	V	P	A	L	L	S	G	T	T	.	.	.	.	.	R	P	Q	D	I	R	R	G	R	C	S	A	G	H	K	S	L	W	H	E	S	W	G	G	L	P	P	A	S	F	F	D	E	L	D	P	I	L	N
Query Conservation																		.	.	.	.																	.	.	.	.	.
Alig confidence																		.	.	.	.																	.	.	.	.	.										.	.	.	.	.	.																				.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.																				.	.	.	.	.
Template Sequence		K	W	I	L	D	N	V	E	G	A	R	E	K	A	E	K	G	D	L	L	F	G	N	T	D	T	W	V	L	W	N	M	T	G	G	T	E	G	G	V	H	V	T	D	V	T	N	A	S	R	.	.	.	.	.	.	T	M	L	M	D	L	D	T	L	S	W	R	E	D	I	A	A	D	M	.	.	.	.	.
Template Known Secondary structure								S	T	T								T																T	T	T	T	T	T											T	T	.	.	.	.	.	.	T	T				T	T	T	T										T	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.																				.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190							.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		R	H	L	P	S	P	L	F	T	D	T	W	T	A	D	I	P	V	G	T	L	C	P	E	W	A	Q	R	L	G	L	P	E	S	V	V	I	S	G	G	A	F	D	C	H	M	G	A	V	G	A	G	A	.	Q	P	N	A	L	V	K	V	I	G	T	S	T	C	D	I	L	I	A	D	K	Q	S	V	G	E
Query Conservation																																																							.
Alig confidence		.																							.	.	.	.	.																										.
Template Conservation		.																							.	.	.	.	.
Template Sequence		.	G	I	P	L	S	M	L	P	D	I	R	S	S	S	E	V	Y	G	H	G	R	P	.	.	.	.	.	R	G	L	V	P	G	V	P	I	A	G	I	L	G	D	Q	Q	A	A	T	F	G	Q	A	C	F	E	V	G	Q	A	K	N	T	Y	G	T	G	N	F	L	L	L	N	T	G	T	E	K	V	M	S
Template Known Secondary structure		.	T			G	G	G	S						S									T	.	.	.	.	.	T	S	S	S	T	T																	T	T			S	T	T							S	S	S								T	T	S
Template Predicted Secondary structure		.																							.	.	.	.	.
Template SS confidence
			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.						.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	V	K	G	I	C	G	Q	V	D	G	S	V	V	P	G	F	I	G	L	E	A	G	Q	S	A	F	G	D	I	Y	A	W	F	G	R	V	L	G	W	P	L	E	Q	L	A	A	Q	H	P	E	L	K	T	Q	I	N	A	S	Q	K	Q	L	L	P	A	L	T	E	A	W	A	K	N	P	S	L	D	H
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	N	G	L	L	T	T	V	C	Y	K	I	G	D	A	P	A	V	Y	A	L	E	G	S	I	A	V	T	G	S	L	V	Q	W	L	R	D	N	L	G	M	F	E	D	A	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	W	L	A	G	K	V	Q	D	N	G
Template Known Secondary structure		S	S	S										T	T	S											S		S										T	T		T	T	T	T		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T					T	T	S	S	S		T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330																						.	.	.	.	.	.	.	.	.	340	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		L	P	V	V	L	D	W	F	N	G	R	R	T	P	N	A	N	Q	R	L	K	G	V	I	T	D	L	N	L	A	T	D	A	P	L	L	F	G	G	L	I	A	A	T	A	F	G	A	R	A	I	M	E	C	F	T	D	.	Q	G	I	A	V	N	N	V	M	A	L	G	G	I	A	R	K	N	Q	V	I	M
Query Conservation																																																											.
Alig confidence																																																											.																.
Template Conservation																																																																											.
Template Sequence		G	A	Y	F	V	P	A	F	S	G	L	F	A	P	Y	W	R	P	D	A	R	G	A	L	V	G	L	T	R	Y	V	N	R	N	H	I	A	R	A	A	L	E	A	T	A	F	Q	S	R	E	V	V	D	A	M	N	A	D	S	G	V	D	L	T	E	L	R	V	D	G	G	M	V	.	A	N	E	L	L	M
Template Known Secondary structure		T						T	T				S	T	T	T					S									S	S																														S										S	G	G	G	.	G
Template Predicted Secondary structure																																																																											.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.		.	.	.	.	420	.
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	C	C	D	V	L	N	R	P	L	Q	I	V	A	S	D	Q	C	C	A	L	G	A	A	I	F	A	A	V	A	A	K	V	H	A	D	I	P	S	A	Q	Q	K	M	A	S	A	V	E	K	T	L	Q	P	C	S	E	Q	A	Q	R	F	E	Q	L	Y	R	R	Y	Q	Q	W	A	M	S	A	E	Q	H
Query Conservation
Alig confidence																																																	.	.													.
Template Conservation																																																	.	.													.
Template Sequence		Q	F	Q	A	D	Q	L	G	V	D	V	V	R	P	K	V	A	E	T	T	A	L	G	A	A	Y	A	A	G	I	A	V	G	F	W	K	G	E	Q	D	V	I	D	N	W	A	E	.	.	D	K	R	W	S	P	S	M	E	S	G	E	.	R	E	R	L	Y	R	N	W	K	K	A	V	T	K	T	M	E	W
Template Known Secondary structure									T	S						S		S																T	S	S		S											.	.								S					.
Template Predicted Secondary structure																																																	.	.													.
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.			.	470	.	.	.	.	.	.	.	.	.	480		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
		550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	E
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		499	500	.