 |
Job Description | Q1PI72 | Confidence | 4.76% | Date | Thu Jan 5 12:33:31 GMT 2012 |
Rank | 90 | Aligned Residues | 37 |
% Identity | 11% | Template | c2gk7A_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:regulator of nonsense transcripts 1; |
PDBTitle: structural and functional insights into the human upf1 helicase core
|
Resolution | 2.80 Å |
|
  |   |
178 | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | E | Y | A | I | A | N | D | R | D | S | V | T | L | V | H | K | G | N | I | M | K | F | T | E | G | A | F | K | D | W | G | Y | Q | L | A | R | E |
Query Conservation |   |
|   |   |
|   |   |
|   |
|   |   |
|
|   |
|   |
|
|
|
|
|
|   |
|   |
|
|
|   |   |
|   |   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|
|
|   |   |
|
|
|
|
|   |   |   |   |
|   | . |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
Template Sequence |   |
L | N | V | A | L | T | R | A | R | Y | G | V | I | I | V | G | N | P | K | A | L | S | . |
K | Q | P | L | W | N | H | L | L | N | Y | Y | K | E | Q |
Template Known Secondary structure |   |
 |  |  |  |  | T | S |  |  |  |  |  |  |  |  |  |
|  |  |  |  |
| . | S | S |  |  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
859 | 860 | . | . | . | . | . | . | . | . | . | 870 | . | . | . | . | . | . | . | . | . | 880 | |
. | . | . | . | . | . | . | . | . | 890 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|