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Job DescriptionP29745
Confidence100.00%DateThu Jan 5 11:45:41 GMT 2012
Rank7Aligned Residues359
% Identity19%Templatec3mruB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:aminoacyl-histidine dipeptidase; PDBTitle: crystal structure of aminoacylhistidine dipeptidase from vibrio2 alginolyticus
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60....... ..70.........80
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Query Sequence  DKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKGTLMATLPANVP. GDIPAIGFISHVD
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Template Sequence  APLWQFFDKICSIPHPSK. . . . . . . . . . HEEALAQYIVTWATEQGFDV. RRDPTGNVFIKKPATPGMENKKGVVLQAHID
Template Known Secondary structure  TTS

BTT..........

TTTT

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   14.....20.........30. ........40.........50. ........60.........70.........80..
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  TSPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKKI
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Template Sequence  MVPQKNEDT. . . . . . . . . . . . . . . . . . . . . . DHDFTQDPIQPYIDGEWVTAKGTT. . . . LGADNGIGMASCLAVLASKEI
Template Known Secondary structure  B


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   83......90. ........100.........110..... ....120.........130......
 
   161........170.... .....180.........190.........200 .........210......... 220
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Query Sequence  PHGDIRVAFTPDEE. VGKGAKHFDVDAFDARWAYTVDGGGV. . . . . . . . . . . . . . . . . . GELEFENFNAASVNIKIVG. N
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Template Sequence  KHGPIEVLLTIDEEAGMTGAFGLEAGWLKGDILLNTDSEQEGEVYMGCAGGIDGAMTFDITRDAIPAGFITRQLTLKGLK
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   137..140.........150.........160.........170.........180.........190.........200.........210......
 
   221........230.. .......240.........250.......
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Query Sequence  NVHPGTAKGVMV. NALSLAARIHAEVPADESPEMTEGY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GGHSGCDIHTGRGNANKLIGRFLAGHAQELDLRLVEFRGGSLRNAIPREAFVTVALPAENQDKLAELFNYYTELLKTELG
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BTTTGGGS



T

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GGGT
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   217..220.........230.........240.........250.........260.........270.........280.........290......
 
   258.260.........270.........280.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EGFYHLASMKGTVERADMHYIIRDFDRKQF
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Template Sequence  KIETDIVTFNEEVATDAQVFAIADQQRFIAALNACPNGVMRMSDEVEGVVETSLNVGVITTEENKVTVLCLIRSLIDSGR
Template Known Secondary structure  TT






S

S

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   297..300.........310.........320.........330.........340.........350.........360.........370......
 
   288.290.........300.........310.........320.........330.........340... ......350.........360....
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Query Sequence  EARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDC. DIEPELKPIRGGTDGAQLSFM. .
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Template Sequence  SQVEGMLQSVAELAG. . . . . . . . . . AQIEFSGAYPGWKPDADSEIMAIFRDMYEGIYGHKPNIMVIHAGLECGLFKEPYP
Template Known Secondary structure  TT..........


B


SS
TTTTTT

S

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GGGGGGSSSS
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   377..380.........390. ........400.........410.........420.........430.........440......
 
   365....370.........380.........390.........400.......
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Query Sequence  GLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAQR
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Template Sequence  NMDMVSFGPTIKFPHSPDEKVKIDTVQLFWDQMVALLEAIPEK
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STTSTT
T

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   447..450.........460.........470.........480.........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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