 |
Job Description | P29745 | Confidence | 93.12% | Date | Thu Jan 5 11:45:41 GMT 2012 |
Rank | 85 | Aligned Residues | 76 |
% Identity | 20% | Template | c3k9tA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:putative peptidase; |
PDBTitle: crystal structure of putative peptidase (np_348812.1) from clostridium2 acetobutylicum at 2.37 a resolution
|
Resolution | 2.37 Å |
|
 |
  |   |
329 | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | |
. | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | |
|
. | . | . | 370 | . | |
|
|
. | . | . | . | . | . | . | . | 380 | . | . | |
|
|
. | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
| . | . |
|  |  |  |  | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | P | H | I | L | D | I | A | Q | Q | A | M | R | D | C | D | I | E | P | E | L | K | P | . |
I | R | G | G | T | D | G | A | Q | L | S | F | M | G | L | . |
. |
P | C | P | N | L | . |
. |
. |
F | T | G | G | Y | N | Y | H | G | K | H | . |
. |
. |
E | F | V | T | L | E | G | M | E | K | A | V | Q | V | I | V | R |
Query Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   | . |   |   |
|
|
|
|
|   |   |   |   |   |   |
|
| . | . |
|   |
|   |   | . | . | . |
|   |
|   |   |   |   |
|   |   |   | . | . | . |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|   |   |
|   |
|
|
|
|   |
|
|
|   |   |   |   |
|
|   |   |
|   |
|
|
|
|
|
|   |
|
|
|
|   |
|
|   |
|   |
|
|   |
|   |   |   |   |   |   |
Template Sequence |   |
D | A | E | I | D | K | I | V | E | K | V | L | X | H | C | G | S | E | Y | Y | V | A | D | F | F | P | W | G | S | D | E | R | Q | F | S | S | P | G | I | N | L | S | V | G | S | L | X | R | S | C | Y | G | F | D | G | Y | H | T | S | A | D | N | L | C | Y | X | N | K | D | G | L | A | D | S | Y | K | T | Y | L | E |
Template Known Secondary structure |   |
S | S |  |  |  |  |  |  |  |  |  |  |  |  | S | S | S |
|  |  |  |  |
|
|
| S |
| S | S | T |  |  |  |  | T | S | T | T | T |
|
|
|  |  |  |  |  | S | S |
| T | T |
| T | T | T | T | B | T | T | S | S | G | G | G |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
268 | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . |
  |
  |   |
400 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
Query Sequence |   |
I | A | E | L | T |
Query Conservation |   |
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|
Template Sequence |   |
V | I | Y | T | I |
Template Known Secondary structure |   |
 |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
  |   |
348 | . | 350 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|