Job Description P29745 Confidence 98.93% Date Thu Jan 5 11:45:41 GMT 2012 Rank 74 Aligned Residues 185 % Identity 26% Template c3iibA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:peptidase m28; PDBTitle: crystal structure of peptidase m28 precursor (yp_926796.1) from2 shewanella amazonensis sb2b at 1.70 a resolution Resolution 1.70 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	M	A	T	L	P	A	N	V	P	G	D	I	P	A	I	G	F	I	S	H	V	D	T	S	P	D	C	S	G	K	N	V	N	P	Q	I	V	E	N	Y	R	G	G	D	I	A	L	G	I	G	D	E	V	L	S	P	V	M	F	P	V	L	H	Q	L	L	G	Q	T	L	I	T	T	D	G	K	T	L
Query Conservation
Alig confidence															.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	V	I	A	E	V	K	G	S	T	K	A	D	.	E	I	V	L	I	G	A	H	L	D	S	W	D	E	G	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S	T				.													S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																											.														.																.	.	.	.
Query SS confidence																											.														.																.	.	.	.
Query Sequence		L	G	A	D	D	K	A	G	I	A	E	I	M	T	A	L	A	V	L	Q	Q	K	K	I	P	.	H	G	D	I	R	V	A	F	T	P	D	E	E	.	V	G	K	G	A	K	H	F	D	V	D	A	F	D	A	.	.	.	.	R	W	A	Y	T	V	D	G	G	G	V	G	E	L	E	F	E	N	F	N	A
Query Conservation																											.														.																.	.	.	.
Alig confidence		.																									.														.																.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	A	I	D	D	G	A	G	V	A	I	V	T	A	A	A	K	H	I	L	D	L	P	Q	K	P	E	R	T	I	R	V	V	L	Y	A	A	E	E	L	G	L	L	G	G	K	T	Y	A	K	E	H	E	A	E	L	E	K	H	Y	I	A	A	E	S	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	T	T	T	T																T	S	S	S			S									S		G	G	G	T	S										T	G	G	G	G	G	G									S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	V	N	I	K	I	V	G	N	N	V	H	P	G	T	A	K	G	V	M	V	N	A	L	S	L	A	A	R	I	H	A	E	V	P	A	D	E	S	P	E	M	T	E	G	Y	E	G	F	Y	H	L	A	S	M	K	G	T	V	E	R	A	D	M	H	Y	I	I	R	D	F	D	R	K	Q	F	E	A	R
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	K	M	M	E	I	A	K	K	V	G	K	G	L	H	P	D	C	Y	I	E	L	V	I	E	D	S	Y	Y	N	M	R	E	K	V	V	E	H	P	H	I	L	D	I	A	Q	Q	A	M	R	D	C	D	I	E	P	E	L	K	P	I	R	G	G	T	D	G	A	Q	L	S	F	M	G	L	P	C	P	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	G	P	I	Y	Q	I	D	W	R	V	A	D	T	A	.	.	.	.	.	.	.	.	H	S	P	V	I	N	A	X	K	V	A	E	P	L	G	V	A	A	G	N	N	K	A	S	G	G	P	D	V	S	X	L	P	A	L	G	V	P	V	A	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T															.	.	.	.	.	.	.	.								G	G	G	G	G	G	G	T						S						G	G	G	T	T	S	G	G	G	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Template SS confidence
																	356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.									.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		371	.	.	.	.	.	.					.	.	380	.	.				.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.						.	.	.
Query SS confidence									.	.	.	.						.	.	.
Query Sequence		L	F	T	G	G	Y	N	.	.	.	.	Y	H	G	K	H	.	.	.	E	F	V	T	L	E	G	M	E	K	A	V	Q	V	I	V	R	I	A	E	L	T	A	Q	R	K
Query Conservation									.	.	.	.						.	.	.
Alig confidence									.	.	.	.						.	.	.
Template Conservation
Template Sequence		L	R	Q	D	G	S	D	Y	F	D	Y	H	H	T	P	N	D	T	L	D	K	I	N	P	E	A	L	A	Q	N	V	A	V	Y	A	Q	F	A	W	V	X	A	N	S	K
Template Known Secondary structure							T	T	G	G	G	T	T	T	S	T	T			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions