Job Description P29745 Confidence 100.00% Date Thu Jan 5 11:45:41 GMT 2012 Rank 17 Aligned Residues 351 % Identity 18% Template c3ic1A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of zinc-bound succinyl-diaminopimelate desuccinylase2 from haemophilus influenzae Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	L	L	E	R	F	L	N	Y	V	S	L	D	T	Q	S	K	A	G	V	R	Q	V	P	S	T	E	G	Q	W	K	L	L	H	L	L	K	E	Q	L	E	E	M	G	L	I	N	V	T	L	S	E	K	G	T	L	M	A	T	L	P	A	N	V	P	G	D	I	P	A	I	G	F	I	S	H	V	D	T
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.																																					.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.																																					.	.
Template Sequence		E	K	V	V	S	L	A	Q	D	L	I	R	R	P	S	I	S	P	.	.	.	.	.	.	.	.	.	.	N	D	E	G	C	Q	Q	I	I	A	E	R	L	E	K	L	G	F	Q	I	E	W	M	P	F	N	D	T	L	N	L	W	A	K	H	G	.	.	T	S	E	P	V	I	A	F	A	G	H	T	D	V
Template Known Secondary structure													T	S			B	T	T	.	.	.	.	.	.	.	.	.	.			T	T											T	T	T								B	T	T	B								S	.	.	S	S	S	S										B
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																																					.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20											.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	D	C	S	G	K	N	V	N	P	Q	I	V	E	N	Y	R	G	G	D	I	A	L	G	I	G	D	E	V	L	S	P	V	M	F	P	V	L	H	Q	L	L	G	Q	T	L	I	T	T	D	G	K	T	L	L	G	A	D	D	K	A	G	I	A	E	I	M	T	A	L	A	V	L	Q	Q	K	K	I	P
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Sequence		V	P	T	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	Q	W	S	S	P	P	F	S	A	E	I	I	D	G	M	L	Y	G	R	G	A	A	.	.	.	.	D	M	K	G	S	L	A	A	M	I	V	A	A	E	E	Y	V	K	A	N	P	N
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G		S	S		T	T	T					T	T				S	T	T	T	T	.	.	.	.	T	T																			T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template SS confidence
		71	.	.	.	.																										.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.					100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
			162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.							.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure		.																		.	.	.	.	.	.																								.	.	.	.
Query SS confidence		.																		.	.	.	.	.	.																								.	.	.	.
Query Sequence		.	H	G	D	I	R	V	A	F	T	P	D	E	E	V	G	K	G	.	.	.	.	.	.	A	K	H	F	D	V	D	A	F	D	A	R	W	A	Y	T	V	D	G	G	G	V	G	.	.	.	.	E	L	E	F	E	N	F	N	A	A	S	V	N	I	K	I	V	G	N	N	V	H	P	G	T	A	K	G	V
Query Conservation		.																		.	.	.	.	.	.																								.	.	.	.
Alig confidence		.																		.	.	.	.	.	.																								.	.	.	.																									.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		H	K	G	T	I	A	L	L	I	T	S	D	E	E	A	T	A	K	D	G	T	I	H	V	V	E	T	L	M	A	R	D	E	K	I	T	Y	C	M	V	G	E	P	S	S	A	K	N	L	G	D	V	V	K	N	G	R	R	G	S	I	T	G	N	L	Y	I	Q	G	I	Q	Y	P	H	L	.	.	.	.	.
Template Known Secondary structure			S	S								S		S	S	S			S	S	S											T	T													B	S	S	S	T	T	S																									.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.							.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.
Query Sequence		M	V	N	A	L	S	L	A	A	R	I	H	A	E	V	P	A	D	E	S	P	.	.	.	.	.	.	E	M	T	E	G	Y	E	G	F	Y	H	L	A	S	M	K	G	T	V	E	R	A	D	M	H	Y	I	I	R	D	F	D	R	K	Q	F	E	A	R	K	R	K	M	M	E	I	A	K	K	V	G	K	G
Query Conservation																							.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.																																																				.	.
Template Conservation																																																																																.	.
Template Sequence		A	E	N	P	I	H	K	A	A	L	F	L	Q	E	L	T	T	Y	Q	W	D	K	G	N	E	F	F	P	P	T	S	L	Q	I	A	N	I	H	A	G	T	G	S	V	I	P	A	E	L	Y	I	Q	F	N	L	R	Y	C	T	E	V	T	D	E	I	I	K	Q	K	V	A	E	M	L	E	K	H	N	.	.
Template Known Secondary structure		T	T																						B	T	T	B																				S												T	T	S																T	T	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	P	D	C	Y	I	E	L	V	I	E	D	S	Y	Y	N	M	R	E	K	V	V	E	H	P	H	I	L	D	I	A	Q	Q	A	M	R	D	C	D	I	E	P	E	L	K	P	I	R	G	G	T	D	G	A	Q	L	S	F	M	G	L	P	C	P	N	L	F	T	G	G	Y	N	Y	H	G	K	H	E	F
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	L	K	Y	R	I	E	W	N	L	S	G	K	P	F	L	T	K	P	G	K	L	L	D	S	I	T	S	A	I	E	E	T	I	G	I	T	P	K	A	E	T	G	G	G	T	S	D	G	R	F	I	A	L	M	G	A	E	V	V	E	F	G	P	L	N	S	T	I	H	K	V	N	E	C
Template Known Secondary structure		.	.	.	.	.	.																		S	S															S										S			S					G	G	G	T								S	B		T	T	T	T	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	L	E	G	M	E	K	A	V	Q	V	I	V	R	I	A	E	L	T	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	V	E	D	L	G	K	C	G	E	I	Y	H	K	M	L	V	N	L	L	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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